Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH1Q08174 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH1Q08174 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH1Q08174 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.62■□□□□ 0.57
PCDH1Q08174 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
PCDH1Q08174 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH1Q08174 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.62■□□□□ 0.57
PCDH1Q08174 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH1Q08174 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
PCDH1Q08174 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
PCDH1Q08174 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH1Q08174 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
PCDH1Q08174 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH1Q08174 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH1Q08174 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH1Q08174 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH1Q08174 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.61■□□□□ 0.57
PCDH1Q08174 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
PCDH1Q08174 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH1Q08174 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH1Q08174 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH1Q08174 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.61■□□□□ 0.57
PCDH1Q08174 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.61■□□□□ 0.57
PCDH1Q08174 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.61■□□□□ 0.57
PCDH1Q08174 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
PCDH1Q08174 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.61■□□□□ 0.57
PCDH1Q08174 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH1Q08174 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.61■□□□□ 0.57
PCDH1Q08174 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.61■□□□□ 0.57
PCDH1Q08174 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.61■□□□□ 0.57
PCDH1Q08174 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.61■□□□□ 0.57
PCDH1Q08174 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.61■□□□□ 0.57
PCDH1Q08174 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH1Q08174 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH1Q08174 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH1Q08174 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH1Q08174 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH1Q08174 LINC01465-201ENST00000408887 1940 ntBASIC18.61■□□□□ 0.57
PCDH1Q08174 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH1Q08174 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH1Q08174 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH1Q08174 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH1Q08174 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH1Q08174 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH1Q08174 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH1Q08174 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
PCDH1Q08174 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH1Q08174 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH1Q08174 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
PCDH1Q08174 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.6■□□□□ 0.57
PCDH1Q08174 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.6■□□□□ 0.57
PCDH1Q08174 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH1Q08174 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH1Q08174 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH1Q08174 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.6■□□□□ 0.57
PCDH1Q08174 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH1Q08174 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
PCDH1Q08174 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH1Q08174 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.6■□□□□ 0.57
PCDH1Q08174 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
PCDH1Q08174 CD99P1-205ENST00000527459 561 ntBASIC18.6■□□□□ 0.57
PCDH1Q08174 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
PCDH1Q08174 AC124016.1-201ENST00000609552 612 ntBASIC18.6■□□□□ 0.57
PCDH1Q08174 HLA-A-209ENST00000638375 975 ntBASIC18.6■□□□□ 0.57
PCDH1Q08174 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH1Q08174 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH1Q08174 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.6■□□□□ 0.57
PCDH1Q08174 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH1Q08174 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.6■□□□□ 0.57
PCDH1Q08174 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.6■□□□□ 0.57
PCDH1Q08174 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.6■□□□□ 0.57
PCDH1Q08174 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH1Q08174 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
PCDH1Q08174 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH1Q08174 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH1Q08174 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH1Q08174 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH1Q08174 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH1Q08174 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH1Q08174 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.59■□□□□ 0.57
PCDH1Q08174 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.59■□□□□ 0.57
PCDH1Q08174 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH1Q08174 AC073648.6-201ENST00000641589 218 ntBASIC18.59■□□□□ 0.57
PCDH1Q08174 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
PCDH1Q08174 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH1Q08174 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
PCDH1Q08174 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.59■□□□□ 0.57
PCDH1Q08174 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.59■□□□□ 0.57
PCDH1Q08174 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH1Q08174 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH1Q08174 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDH1Q08174 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PCDH1Q08174 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PCDH1Q08174 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.58■□□□□ 0.57
PCDH1Q08174 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
PCDH1Q08174 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PCDH1Q08174 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.58■□□□□ 0.57
PCDH1Q08174 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.57
PCDH1Q08174 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.58■□□□□ 0.57
PCDH1Q08174 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms