Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL7A1Q02388 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL7A1Q02388 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL7A1Q02388 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL7A1Q02388 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC13.85□□□□□ -0.19
COL7A1Q02388 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL7A1Q02388 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL7A1Q02388 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC13.85□□□□□ -0.19
COL7A1Q02388 AC079776.4-201ENST00000511039 504 ntBASIC13.85□□□□□ -0.19
COL7A1Q02388 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC13.85□□□□□ -0.19
COL7A1Q02388 AL355385.1-201ENST00000606123 409 ntBASIC13.85□□□□□ -0.19
COL7A1Q02388 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC13.85□□□□□ -0.19
COL7A1Q02388 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL7A1Q02388 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL7A1Q02388 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL7A1Q02388 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
COL7A1Q02388 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC13.85□□□□□ -0.19
COL7A1Q02388 KRT8P8-201ENST00000434750 1448 ntBASIC13.85□□□□□ -0.19
COL7A1Q02388 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC13.85□□□□□ -0.19
COL7A1Q02388 PHB2-202ENST00000440277 996 ntTSL 5 BASIC13.84□□□□□ -0.19
COL7A1Q02388 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC13.84□□□□□ -0.19
COL7A1Q02388 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
COL7A1Q02388 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC13.84□□□□□ -0.19
COL7A1Q02388 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL7A1Q02388 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC13.84□□□□□ -0.19
COL7A1Q02388 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC13.84□□□□□ -0.19
COL7A1Q02388 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL7A1Q02388 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC13.84□□□□□ -0.19
COL7A1Q02388 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC13.84□□□□□ -0.19
COL7A1Q02388 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC13.84□□□□□ -0.19
COL7A1Q02388 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
COL7A1Q02388 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL7A1Q02388 HOTTIP_1.1-201ENST00000620415 57 ntBASIC13.84□□□□□ -0.19
COL7A1Q02388 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL7A1Q02388 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL7A1Q02388 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC13.84□□□□□ -0.19
COL7A1Q02388 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC13.84□□□□□ -0.19
COL7A1Q02388 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL7A1Q02388 ERF-202ENST00000440177 2032 ntTSL 2 BASIC13.84□□□□□ -0.19
COL7A1Q02388 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC13.84□□□□□ -0.19
COL7A1Q02388 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC13.84□□□□□ -0.19
COL7A1Q02388 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL7A1Q02388 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL7A1Q02388 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL7A1Q02388 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
COL7A1Q02388 CIB2-208ENST00000560618 804 ntTSL 2 BASIC13.84□□□□□ -0.19
COL7A1Q02388 TPSP2-201ENST00000561760 610 ntBASIC13.84□□□□□ -0.19
COL7A1Q02388 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC13.84□□□□□ -0.19
COL7A1Q02388 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC13.84□□□□□ -0.19
COL7A1Q02388 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.19
COL7A1Q02388 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL7A1Q02388 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC13.83□□□□□ -0.2
COL7A1Q02388 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL7A1Q02388 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC13.83□□□□□ -0.2
COL7A1Q02388 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL7A1Q02388 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC13.83□□□□□ -0.2
COL7A1Q02388 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL7A1Q02388 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL7A1Q02388 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL7A1Q02388 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL7A1Q02388 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL7A1Q02388 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
COL7A1Q02388 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL7A1Q02388 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
COL7A1Q02388 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
COL7A1Q02388 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL7A1Q02388 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL7A1Q02388 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL7A1Q02388 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL7A1Q02388 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC13.83□□□□□ -0.2
COL7A1Q02388 AL160286.2-201ENST00000567150 934 ntBASIC13.83□□□□□ -0.2
COL7A1Q02388 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC13.83□□□□□ -0.2
COL7A1Q02388 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL7A1Q02388 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL7A1Q02388 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC13.83□□□□□ -0.2
COL7A1Q02388 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC13.83□□□□□ -0.2
COL7A1Q02388 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL7A1Q02388 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
COL7A1Q02388 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL7A1Q02388 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
COL7A1Q02388 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL7A1Q02388 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL7A1Q02388 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC13.82□□□□□ -0.2
COL7A1Q02388 KRT8P11-201ENST00000409686 1436 ntBASIC13.82□□□□□ -0.2
COL7A1Q02388 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC13.82□□□□□ -0.2
COL7A1Q02388 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL7A1Q02388 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL7A1Q02388 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC13.82□□□□□ -0.2
COL7A1Q02388 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL7A1Q02388 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC13.82□□□□□ -0.2
COL7A1Q02388 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL7A1Q02388 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
COL7A1Q02388 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL7A1Q02388 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
COL7A1Q02388 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL7A1Q02388 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
COL7A1Q02388 REXO1L6P-202ENST00000619970 1078 ntBASIC13.82□□□□□ -0.2
COL7A1Q02388 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC13.82□□□□□ -0.2
COL7A1Q02388 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL7A1Q02388 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms