Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 RCC2P6-201ENST00000526625 1557 ntBASIC21.29■■□□□ 1
PEX3P56589 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.29■■□□□ 1
PEX3P56589 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
PEX3P56589 MESTP1-201ENST00000404287 994 ntBASIC21.29■■□□□ 1
PEX3P56589 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.29■■□□□ 1
PEX3P56589 TSPY15P-201ENST00000457163 923 ntBASIC21.29■■□□□ 1
PEX3P56589 B3GAT3P1-201ENST00000471720 806 ntBASIC21.29■■□□□ 1
PEX3P56589 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.29■■□□□ 1
PEX3P56589 AL355075.4-201ENST00000554988 638 ntBASIC21.29■■□□□ 1
PEX3P56589 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
PEX3P56589 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC21.29■■□□□ 1
PEX3P56589 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.29■■□□□ 1
PEX3P56589 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
PEX3P56589 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PEX3P56589 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC21.28■■□□□ 1
PEX3P56589 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.28■■□□□ 1
PEX3P56589 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
PEX3P56589 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PEX3P56589 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
PEX3P56589 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PEX3P56589 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.28■■□□□ 1
PEX3P56589 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.28■■□□□ 1
PEX3P56589 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC21.28■■□□□ 1
PEX3P56589 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC21.28■■□□□ 1
PEX3P56589 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC21.28■■□□□ 1
PEX3P56589 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.28■■□□□ 1
PEX3P56589 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.28■■□□□ 1
PEX3P56589 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
PEX3P56589 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PEX3P56589 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PEX3P56589 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC21.28■■□□□ 1
PEX3P56589 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC21.28■■□□□ 1
PEX3P56589 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
PEX3P56589 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PEX3P56589 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PEX3P56589 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
PEX3P56589 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.28■■□□□ 1
PEX3P56589 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PEX3P56589 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PEX3P56589 FSCN1P1-201ENST00000568912 1481 ntBASIC21.27■■□□□ 1
PEX3P56589 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.27■■□□□ 1
PEX3P56589 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PEX3P56589 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
PEX3P56589 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC21.27■■□□□ 1
PEX3P56589 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
PEX3P56589 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.27■■□□□ 1
PEX3P56589 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.27■■□□□ 1
PEX3P56589 AC008040.2-201ENST00000461049 708 ntBASIC21.27■■□□□ 1
PEX3P56589 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.27■■□□□ 1
PEX3P56589 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC21.27■■□□□ 1
PEX3P56589 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.27■■□□□ 1
PEX3P56589 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.27■■□□□ 1
PEX3P56589 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC21.27■■□□□ 1
PEX3P56589 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC21.27■■□□□ 1
PEX3P56589 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.27■■□□□ 1
PEX3P56589 SNX21-213ENST00000614929 587 ntTSL 5 BASIC21.27■■□□□ 1
PEX3P56589 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PEX3P56589 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
PEX3P56589 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.27■■□□□ 1
PEX3P56589 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC21.27■■□□□ 1
PEX3P56589 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC21.27■■□□□ 1
PEX3P56589 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC21.27■■□□□ 1
PEX3P56589 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
PEX3P56589 AC007952.6-201ENST00000573168 2673 ntBASIC21.27■■□□□ 1
PEX3P56589 AC003957.1-201ENST00000625108 2673 ntBASIC21.27■■□□□ 1
PEX3P56589 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PEX3P56589 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PEX3P56589 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PEX3P56589 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC21.26■□□□□ 0.99
PEX3P56589 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.26■□□□□ 0.99
PEX3P56589 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PEX3P56589 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PEX3P56589 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
PEX3P56589 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC21.26■□□□□ 0.99
PEX3P56589 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PEX3P56589 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC21.26■□□□□ 0.99
PEX3P56589 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
PEX3P56589 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PEX3P56589 KRT8P41-201ENST00000533985 1514 ntBASIC21.26■□□□□ 0.99
PEX3P56589 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PEX3P56589 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PEX3P56589 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21.26■□□□□ 0.99
PEX3P56589 AC004951.3-201ENST00000418645 1148 ntBASIC21.26■□□□□ 0.99
PEX3P56589 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
PEX3P56589 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.26■□□□□ 0.99
PEX3P56589 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC21.26■□□□□ 0.99
PEX3P56589 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC21.26■□□□□ 0.99
PEX3P56589 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PEX3P56589 AC011298.2-201ENST00000617989 482 ntBASIC21.26■□□□□ 0.99
PEX3P56589 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PEX3P56589 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PEX3P56589 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PEX3P56589 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PEX3P56589 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PEX3P56589 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PEX3P56589 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
PEX3P56589 AC093484.2-201ENST00000580996 2166 ntBASIC21.26■□□□□ 0.99
PEX3P56589 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC21.26■□□□□ 0.99
PEX3P56589 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PEX3P56589 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms