Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CDV3P1-201ENST00000471403 739 ntBASIC14.49□□□□□ -0.09
FOXA3P55318 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA3P55318 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA3P55318 CCDC92B-201ENST00000575506 885 ntBASIC14.49□□□□□ -0.09
FOXA3P55318 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC14.49□□□□□ -0.09
FOXA3P55318 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA3P55318 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA3P55318 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA3P55318 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
FOXA3P55318 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA3P55318 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
FOXA3P55318 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC14.49□□□□□ -0.09
FOXA3P55318 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA3P55318 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
FOXA3P55318 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
FOXA3P55318 AC068880.1-201ENST00000507289 2297 ntBASIC14.49□□□□□ -0.09
FOXA3P55318 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
FOXA3P55318 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA3P55318 AC087633.2-202ENST00000565166 1439 ntBASIC14.49□□□□□ -0.09
FOXA3P55318 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
FOXA3P55318 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA3P55318 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC14.48□□□□□ -0.09
FOXA3P55318 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC14.48□□□□□ -0.09
FOXA3P55318 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
FOXA3P55318 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA3P55318 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA3P55318 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA3P55318 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA3P55318 EFTUD1P1-204ENST00000560401 1798 ntBASIC14.48□□□□□ -0.09
FOXA3P55318 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA3P55318 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA3P55318 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA3P55318 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC14.48□□□□□ -0.09
FOXA3P55318 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA3P55318 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA3P55318 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC14.48□□□□□ -0.09
FOXA3P55318 AL136116.3-201ENST00000402907 1138 ntBASIC14.48□□□□□ -0.09
FOXA3P55318 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC14.48□□□□□ -0.09
FOXA3P55318 DUX4L2-201ENST00000561772 1275 ntBASIC14.48□□□□□ -0.09
FOXA3P55318 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC14.48□□□□□ -0.09
FOXA3P55318 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC14.48□□□□□ -0.09
FOXA3P55318 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC14.48□□□□□ -0.09
FOXA3P55318 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC14.48□□□□□ -0.09
FOXA3P55318 DUX4L6-201ENST00000626483 1275 ntBASIC14.48□□□□□ -0.09
FOXA3P55318 DUX4L1-201ENST00000627662 1275 ntBASIC14.48□□□□□ -0.09
FOXA3P55318 DUX4L8-201ENST00000629013 1275 ntBASIC14.48□□□□□ -0.09
FOXA3P55318 DUX4L3-201ENST00000630187 1275 ntBASIC14.48□□□□□ -0.09
FOXA3P55318 DUX4L7-201ENST00000630678 1275 ntBASIC14.48□□□□□ -0.09
FOXA3P55318 DUX4L5-201ENST00000630834 1275 ntBASIC14.48□□□□□ -0.09
FOXA3P55318 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA3P55318 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA3P55318 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
FOXA3P55318 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC14.48□□□□□ -0.09
FOXA3P55318 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA3P55318 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA3P55318 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA3P55318 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC14.48□□□□□ -0.09
FOXA3P55318 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA3P55318 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA3P55318 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
FOXA3P55318 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
FOXA3P55318 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA3P55318 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA3P55318 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA3P55318 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC14.47□□□□□ -0.09
FOXA3P55318 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC14.47□□□□□ -0.09
FOXA3P55318 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC14.47□□□□□ -0.09
FOXA3P55318 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA3P55318 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
FOXA3P55318 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC14.47□□□□□ -0.09
FOXA3P55318 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA3P55318 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA3P55318 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA3P55318 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC14.47□□□□□ -0.09
FOXA3P55318 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA3P55318 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
FOXA3P55318 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC14.47□□□□□ -0.09
FOXA3P55318 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA3P55318 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC14.47□□□□□ -0.09
FOXA3P55318 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC14.47□□□□□ -0.09
FOXA3P55318 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC14.47□□□□□ -0.09
FOXA3P55318 AC027682.1-201ENST00000562846 899 ntBASIC14.47□□□□□ -0.09
FOXA3P55318 SLC7A5P1-201ENST00000568957 537 ntBASIC14.47□□□□□ -0.09
FOXA3P55318 TRIR-205ENST00000592273 783 ntTSL 3 BASIC14.47□□□□□ -0.09
FOXA3P55318 AL031963.3-201ENST00000606441 850 ntBASIC14.47□□□□□ -0.09
FOXA3P55318 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC14.47□□□□□ -0.09
FOXA3P55318 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA3P55318 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
FOXA3P55318 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA3P55318 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA3P55318 KRT8P20-201ENST00000423953 1409 ntBASIC14.47□□□□□ -0.09
FOXA3P55318 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA3P55318 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
FOXA3P55318 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA3P55318 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA3P55318 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA3P55318 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA3P55318 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA3P55318 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA3P55318 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms