Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 ALDH7A1-234ENST00000637782 1773 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.254e-7■■■■□ 21.2
RPS3P23396 DDX17-204ENST00000431312 1853 ntTSL 1 (best)13.23□□□□□ -0.294e-7■■■■□ 21.2
RPS3P23396 PRPF8-202ENST00000571346 865 ntTSL 213.14□□□□□ -0.312e-8■■■■□ 21.2
RPS3P23396 COASY-212ENST00000591583 716 ntTSL 212.86□□□□□ -0.354e-7■■■■□ 21.2
RPS3P23396 ABCF1-206ENST00000479542 893 ntTSL 212.7□□□□□ -0.385e-6■■■■□ 21.2
RPS3P23396 ALDH7A1-224ENST00000636743 2332 ntTSL 5 BASIC12.61□□□□□ -0.394e-7■■■■□ 21.2
RPS3P23396 BMP4-208ENST00000559642 505 ntTSL 312.51□□□□□ -0.414e-7■■■■□ 21.2
RPS3P23396 ALDH7A1-226ENST00000636872 2747 ntTSL 512.51□□□□□ -0.414e-7■■■■□ 21.2
RPS3P23396 ALDH7A1-222ENST00000636286 1431 ntTSL 512.5□□□□□ -0.414e-7■■■■□ 21.2
RPS3P23396 ALDH7A1-210ENST00000503281 937 ntTSL 512.41□□□□□ -0.424e-7■■■■□ 21.2
RPS3P23396 ALDH7A1-235ENST00000637964 1065 ntTSL 512.34□□□□□ -0.434e-7■■■■□ 21.2
RPS3P23396 SYVN1-215ENST00000533685 485 ntTSL 312.28□□□□□ -0.444e-7■■■■□ 21.2
RPS3P23396 NPLOC4-202ENST00000374747 5538 ntTSL 2 BASIC11.88□□□□□ -0.514e-7■■■■□ 21.2
RPS3P23396 MRPL49-207ENST00000532671 2526 ntTSL 211.84□□□□□ -0.514e-7■■■■□ 21.2
RPS3P23396 ALDH7A1-221ENST00000636225 1738 ntTSL 511.74□□□□□ -0.534e-7■■■■□ 21.2
RPS3P23396 ALDH7A1-233ENST00000637292 1222 ntTSL 511.62□□□□□ -0.554e-7■■■■□ 21.2
RPS3P23396 ALDH7A1-205ENST00000458249 2037 ntTSL 511.24□□□□□ -0.614e-7■■■■□ 21.2
RPS3P23396 ALDH7A1-223ENST00000636482 1337 ntTSL 511.21□□□□□ -0.614e-7■■■■□ 21.2
RPS3P23396 ALDH7A1-228ENST00000636886 2321 ntTSL 5 BASIC11.08□□□□□ -0.644e-7■■■■□ 21.2
RPS3P23396 ALDH7A1-219ENST00000636062 1809 ntTSL 510.94□□□□□ -0.664e-7■■■■□ 21.2
RPS3P23396 BMP4-204ENST00000558961 495 ntTSL 310.91□□□□□ -0.664e-7■■■■□ 21.2
RPS3P23396 ELAC2-206ENST00000476042 428 ntTSL 310.76□□□□□ -0.694e-7■■■■□ 21.2
RPS3P23396 ABCF1-202ENST00000376545 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.735e-6■■■■□ 21.2
RPS3P23396 SYVN1-205ENST00000525874 475 ntTSL 310.48□□□□□ -0.734e-7■■■■□ 21.2
RPS3P23396 ALDH7A1-232ENST00000637272 2554 ntAPPRIS ALT1 TSL 5 BASIC10.22□□□□□ -0.774e-7■■■■□ 21.2
RPS3P23396 ABCF1-205ENST00000475993 2860 ntTSL 1 (best)10.21□□□□□ -0.785e-6■■■■□ 21.2
RPS3P23396 ALDH7A1-216ENST00000635851 2135 ntTSL 510.02□□□□□ -0.814e-7■■■■□ 21.2
RPS3P23396 USP11-203ENST00000377080 804 ntTSL 29.94□□□□□ -0.824e-7■■■■□ 21.2
RPS3P23396 ALDH7A1-231ENST00000637206 2466 ntTSL 5 BASIC9.92□□□□□ -0.824e-7■■■■□ 21.2
RPS3P23396 ABCF1-201ENST00000326195 3481 ntAPPRIS P4 TSL 1 (best) BASIC9.79□□□□□ -0.845e-6■■■■□ 21.2
RPS3P23396 TXNRD1-207ENST00000525265 572 ntTSL 29.39□□□□□ -0.913e-7■■■■□ 21.2
RPS3P23396 NPLOC4-216ENST00000574344 573 ntTSL 49.3□□□□□ -0.924e-7■■■■□ 21.2
RPS3P23396 NPLOC4-212ENST00000573328 428 ntTSL 29.3□□□□□ -0.924e-7■■■■□ 21.2
RPS3P23396 ALDH7A1-236ENST00000638008 1865 ntTSL 59.24□□□□□ -0.934e-7■■■■□ 21.2
RPS3P23396 SYVN1-213ENST00000531018 826 ntTSL 39□□□□□ -0.974e-7■■■■□ 21.2
RPS3P23396 ALDH7A1-209ENST00000497231 2255 ntTSL 28.93□□□□□ -0.984e-7■■■■□ 21.2
RPS3P23396 SYVN1-211ENST00000529207 811 ntTSL 58.8□□□□□ -14e-7■■■■□ 21.2
RPS3P23396 NPLOC4-204ENST00000570324 414 ntTSL 38.59□□□□□ -1.034e-7■■■■□ 21.2
RPS3P23396 ALDH7A1-227ENST00000636879 2501 ntTSL 5 BASIC8.57□□□□□ -1.044e-7■■■■□ 21.2
RPS3P23396 ALDH7A1-212ENST00000509459 538 ntTSL 58.5□□□□□ -1.054e-7■■■■□ 21.2
RPS3P23396 TMEM59-204ENST00000371344 2473 ntTSL 2 BASIC6.92□□□□□ -1.34e-7■■■■□ 21.2
RPS3P23396 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.47□□□□□ -1.534e-7■■■■□ 21.2
RPS3P23396 DHX9-203ENST00000474446 848 ntTSL 34.9□□□□□ -1.634e-13■■■■□ 21.2
RPS3P23396 TMEM59-209ENST00000470395 480 ntTSL 24.53□□□□□ -1.684e-7■■■■□ 21.2
RPS3P23396 SF3B3-214ENST00000572365 575 ntTSL 44.46□□□□□ -1.72e-9■■■■□ 21.2
RPS3P23396 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.31□□□□□ -1.724e-7■■■■□ 21.2
RPS3P23396 APLP2-205ENST00000461918 553 ntTSL 32.52□□□□□ -2.014e-13■■■■□ 21.2
RPS3P23396 PTBP1-209ENST00000586481 578 ntTSL 319.24■□□□□ 0.673e-7■■■■□ 21.2
RPS3P23396 PTBP1-216ENST00000590887 642 ntTSL 312.93□□□□□ -0.343e-7■■■■□ 21.2
RPS3P23396 PTBP1-214ENST00000589575 749 ntTSL 312.64□□□□□ -0.393e-7■■■■□ 21.2
RPS3P23396 EIF3I-202ENST00000373586 1458 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.553e-8■■■■□ 21.2
RPS3P23396 KIF2C-206ENST00000472235 480 ntTSL 27.58□□□□□ -1.21e-7■■■■□ 21.2
RPS3P23396 AGRN-206ENST00000477585 707 ntTSL 323.66■■□□□ 1.381e-9■■■■□ 21.2
RPS3P23396 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.45■□□□□ 0.383e-8■■■■□ 21.2
RPS3P23396 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.16■□□□□ 0.343e-8■■■■□ 21.2
RPS3P23396 CMIP-202ENST00000537098 4357 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.493e-8■■■■□ 21.2
RPS3P23396 CMIP-203ENST00000539778 3937 ntTSL 1 (best) BASIC11.93□□□□□ -0.53e-8■■■■□ 21.2
RPS3P23396 CMIP-211ENST00000621537 4000 ntTSL 5 BASIC10.29□□□□□ -0.763e-8■■■■□ 21.2
RPS3P23396 C20orf204-201ENST00000358393 1466 ntTSL 224.64■■□□□ 1.543e-21■■■■□ 21.2
RPS3P23396 C20orf204-204ENST00000463337 1412 ntAPPRIS ALT2 TSL 1 (best)22.13■■□□□ 1.133e-21■■■■□ 21.2
RPS3P23396 ATP6AP1-206ENST00000449556 720 ntTSL 522.14■■□□□ 1.136e-8■■■■□ 21.2
RPS3P23396 TF-203ENST00000460531 577 ntTSL 418.46■□□□□ 0.551e-323■■■■□ 21.2
RPS3P23396 TF-208ENST00000474287 645 ntTSL 217.06■□□□□ 0.321e-323■■■■□ 21.2
RPS3P23396 LRP1-203ENST00000451724 1284 ntTSL 517.23■□□□□ 0.351e-8■■■■□ 21.2
RPS3P23396 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.481e-7■■■■□ 21.2
RPS3P23396 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.461e-7■■■■□ 21.2
RPS3P23396 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.421e-7■■■■□ 21.2
RPS3P23396 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.021e-7■■■■□ 21.2
RPS3P23396 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.345e-7■■■■□ 21.2
RPS3P23396 EPHX2-205ENST00000520623 1923 ntTSL 1 (best)16.88■□□□□ 0.295e-7■■■■□ 21.2
RPS3P23396 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.12■□□□□ 0.175e-7■■■■□ 21.2
RPS3P23396 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.56■□□□□ 0.085e-7■■■■□ 21.2
RPS3P23396 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.28■□□□□ 0.045e-7■■■■□ 21.2
RPS3P23396 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.125e-7■■■■□ 21.2
RPS3P23396 COX7C-201ENST00000247655 666 ntAPPRIS P2 TSL 1 (best) BASIC9.89□□□□□ -0.834e-7■■■■□ 21.1
RPS3P23396 COX7C-207ENST00000515763 347 ntAPPRIS ALT1 TSL 4 BASIC9.89□□□□□ -0.834e-7■■■■□ 21.1
RPS3P23396 COX7C-203ENST00000509578 1584 ntAPPRIS P2 TSL 1 (best) BASIC7.56□□□□□ -1.24e-7■■■■□ 21.1
RPS3P23396 COX7C-202ENST00000505430 496 ntTSL 31.8□□□□□ -2.124e-7■■■■□ 21.1
RPS3P23396 COX7C-205ENST00000511472 369 ntTSL 20.52□□□□□ -2.334e-7■■■■□ 21.1
RPS3P23396 GSN-202ENST00000373807 2823 ntTSL 217.22■□□□□ 0.358e-11■■■■□ 21.1
RPS3P23396 H2AFZ-205ENST00000527366 435 ntTSL 311.37□□□□□ -0.592e-7■■■■□ 21.1
RPS3P23396 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.862e-8■■■■□ 21.1
RPS3P23396 DAZAP2-211ENST00000551534 571 ntTSL 415.88■□□□□ 0.132e-8■■■■□ 21.1
RPS3P23396 DAZAP2-207ENST00000549497 567 ntTSL 413.17□□□□□ -0.32e-8■■■■□ 21.1
RPS3P23396 DAZAP2-203ENST00000436900 1811 ntTSL 511.24□□□□□ -0.612e-8■■■■□ 21.1
RPS3P23396 DAZAP2-205ENST00000449723 2098 ntTSL 5 BASIC11.22□□□□□ -0.612e-8■■■■□ 21.1
RPS3P23396 DAZAP2-215ENST00000604900 1045 ntTSL 3 BASIC10.71□□□□□ -0.692e-8■■■■□ 21.1
RPS3P23396 DAZAP2-214ENST00000552459 3664 ntTSL 210.52□□□□□ -0.732e-8■■■■□ 21.1
RPS3P23396 DAZAP2-212ENST00000551919 485 ntTSL 48.11□□□□□ -1.112e-8■■■■□ 21.1
RPS3P23396 DAZAP2-202ENST00000425012 1117 ntTSL 2 BASIC7.85□□□□□ -1.152e-8■■■■□ 21.1
RPS3P23396 DAZAP2-210ENST00000551313 587 ntTSL 3 BASIC7.53□□□□□ -1.22e-8■■■■□ 21.1
RPS3P23396 DAZAP2-208ENST00000549555 872 ntTSL 2 BASIC7.32□□□□□ -1.242e-8■■■■□ 21.1
RPS3P23396 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC4□□□□□ -1.772e-8■■■■□ 21.1
RPS3P23396 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.93□□□□□ -1.782e-8■■■■□ 21.1
RPS3P23396 ANXA1-206ENST00000489109 749 ntTSL 26.89□□□□□ -1.311e-9■■■■□ 21.1
RPS3P23396 DAZAP2-213ENST00000552173 539 ntTSL 44.05□□□□□ -1.761e-11■■■■□ 21.1
RPS3P23396 RBBP4-207ENST00000460669 783 ntTSL 53.73□□□□□ -1.819e-7■■■■□ 21.1
RPS3P23396 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.432e-6■■■■□ 21.1
RPS3P23396 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.09■□□□□ 0.652e-6■■■■□ 21.1
RPS3P23396 AAMP-209ENST00000489767 1833 ntTSL 516■□□□□ 0.159e-7■■■■□ 21.1
Retrieved 100 of 24,271 protein–RNA pairs in 225.6 ms