Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
USF1P22415 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC16.35■□□□□ 0.21
USF1P22415 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC16.35■□□□□ 0.21
USF1P22415 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
USF1P22415 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
USF1P22415 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC16.34■□□□□ 0.21
USF1P22415 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC16.34■□□□□ 0.21
USF1P22415 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC16.34■□□□□ 0.21
USF1P22415 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
USF1P22415 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
USF1P22415 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
USF1P22415 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
USF1P22415 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
USF1P22415 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
USF1P22415 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
USF1P22415 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
USF1P22415 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC16.34■□□□□ 0.21
USF1P22415 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
USF1P22415 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
USF1P22415 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
USF1P22415 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
USF1P22415 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
USF1P22415 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.34■□□□□ 0.21
USF1P22415 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
USF1P22415 DUX4L26-201ENST00000489078 1255 ntBASIC16.34■□□□□ 0.21
USF1P22415 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.34■□□□□ 0.21
USF1P22415 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC16.34■□□□□ 0.21
USF1P22415 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC16.34■□□□□ 0.21
USF1P22415 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
USF1P22415 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.34■□□□□ 0.21
USF1P22415 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
USF1P22415 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
USF1P22415 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC16.34■□□□□ 0.21
USF1P22415 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
USF1P22415 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
USF1P22415 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
USF1P22415 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
USF1P22415 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC16.33■□□□□ 0.21
USF1P22415 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
USF1P22415 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
USF1P22415 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC16.33■□□□□ 0.21
USF1P22415 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
USF1P22415 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
USF1P22415 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC16.33■□□□□ 0.21
USF1P22415 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
USF1P22415 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
USF1P22415 TSPY14P-201ENST00000303979 915 ntBASIC16.33■□□□□ 0.2
USF1P22415 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
USF1P22415 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
USF1P22415 AC004980.1-204ENST00000429707 299 ntBASIC16.33■□□□□ 0.2
USF1P22415 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
USF1P22415 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
USF1P22415 AC011506.1-201ENST00000474329 610 ntBASIC16.33■□□□□ 0.2
USF1P22415 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.33■□□□□ 0.2
USF1P22415 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
USF1P22415 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
USF1P22415 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
USF1P22415 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
USF1P22415 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.33■□□□□ 0.2
USF1P22415 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
USF1P22415 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
USF1P22415 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
USF1P22415 GOLGA6L3-201ENST00000507199 1679 ntBASIC16.33■□□□□ 0.2
USF1P22415 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
USF1P22415 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
USF1P22415 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
USF1P22415 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
USF1P22415 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
USF1P22415 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.2
USF1P22415 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC16.33■□□□□ 0.2
USF1P22415 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
USF1P22415 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
USF1P22415 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
USF1P22415 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USF1P22415 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
USF1P22415 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
USF1P22415 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USF1P22415 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC16.32■□□□□ 0.2
USF1P22415 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
USF1P22415 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USF1P22415 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USF1P22415 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
USF1P22415 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USF1P22415 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
USF1P22415 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
USF1P22415 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USF1P22415 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC16.32■□□□□ 0.2
USF1P22415 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
USF1P22415 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USF1P22415 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
USF1P22415 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USF1P22415 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.32■□□□□ 0.2
USF1P22415 CYGB-204ENST00000589342 815 ntTSL 3 BASIC16.32■□□□□ 0.2
USF1P22415 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
USF1P22415 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USF1P22415 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF1P22415 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF1P22415 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USF1P22415 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF1P22415 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms