Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A2P08572 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A2P08572 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A2P08572 AC026396.1-201ENST00000419388 421 ntBASIC19.52■□□□□ 0.72
COL4A2P08572 AC246785.2-201ENST00000432512 513 ntBASIC19.52■□□□□ 0.72
COL4A2P08572 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.52■□□□□ 0.72
COL4A2P08572 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A2P08572 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.52■□□□□ 0.72
COL4A2P08572 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.52■□□□□ 0.72
COL4A2P08572 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL4A2P08572 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.52■□□□□ 0.72
COL4A2P08572 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.52■□□□□ 0.71
COL4A2P08572 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL4A2P08572 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.71
COL4A2P08572 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL4A2P08572 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.51■□□□□ 0.71
COL4A2P08572 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
COL4A2P08572 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A2P08572 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A2P08572 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
COL4A2P08572 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.51■□□□□ 0.71
COL4A2P08572 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.51■□□□□ 0.71
COL4A2P08572 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.51■□□□□ 0.71
COL4A2P08572 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.51■□□□□ 0.71
COL4A2P08572 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC19.51■□□□□ 0.71
COL4A2P08572 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
COL4A2P08572 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A2P08572 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.51■□□□□ 0.71
COL4A2P08572 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
COL4A2P08572 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A2P08572 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A2P08572 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
COL4A2P08572 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
COL4A2P08572 AC104417.2-201ENST00000562989 1793 ntBASIC19.51■□□□□ 0.71
COL4A2P08572 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A2P08572 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A2P08572 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
COL4A2P08572 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL4A2P08572 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.51■□□□□ 0.71
COL4A2P08572 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.51■□□□□ 0.71
COL4A2P08572 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.51■□□□□ 0.71
COL4A2P08572 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL4A2P08572 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.5■□□□□ 0.71
COL4A2P08572 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.5■□□□□ 0.71
COL4A2P08572 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL4A2P08572 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
COL4A2P08572 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL4A2P08572 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL4A2P08572 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.5■□□□□ 0.71
COL4A2P08572 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
COL4A2P08572 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL4A2P08572 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL4A2P08572 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
COL4A2P08572 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.5■□□□□ 0.71
COL4A2P08572 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.5■□□□□ 0.71
COL4A2P08572 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL4A2P08572 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
COL4A2P08572 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.5■□□□□ 0.71
COL4A2P08572 AC140113.3-201ENST00000605663 199 ntBASIC19.5■□□□□ 0.71
COL4A2P08572 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.5■□□□□ 0.71
COL4A2P08572 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL4A2P08572 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL4A2P08572 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.5■□□□□ 0.71
COL4A2P08572 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL4A2P08572 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.49■□□□□ 0.71
COL4A2P08572 AL512408.1-201ENST00000569378 2000 ntBASIC19.49■□□□□ 0.71
COL4A2P08572 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
COL4A2P08572 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
COL4A2P08572 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A2P08572 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A2P08572 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A2P08572 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A2P08572 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.49■□□□□ 0.71
COL4A2P08572 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A2P08572 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A2P08572 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A2P08572 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.49■□□□□ 0.71
COL4A2P08572 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.49■□□□□ 0.71
COL4A2P08572 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC19.49■□□□□ 0.71
COL4A2P08572 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
COL4A2P08572 RASA4DP-201ENST00000460726 1199 ntBASIC19.49■□□□□ 0.71
COL4A2P08572 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A2P08572 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.49■□□□□ 0.71
COL4A2P08572 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A2P08572 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A2P08572 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A2P08572 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.49■□□□□ 0.71
COL4A2P08572 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A2P08572 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A2P08572 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.49■□□□□ 0.71
COL4A2P08572 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.49■□□□□ 0.71
COL4A2P08572 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A2P08572 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A2P08572 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A2P08572 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
COL4A2P08572 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A2P08572 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL4A2P08572 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL4A2P08572 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
COL4A2P08572 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms