Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RNF40O75150 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
RNF40O75150 AC211429.1-201ENST00000415277 523 ntBASIC20.78■□□□□ 0.92
RNF40O75150 AC012618.2-201ENST00000428058 849 ntBASIC20.78■□□□□ 0.92
RNF40O75150 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF40O75150 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RNF40O75150 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.78■□□□□ 0.92
RNF40O75150 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.78■□□□□ 0.92
RNF40O75150 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.78■□□□□ 0.92
RNF40O75150 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.78■□□□□ 0.92
RNF40O75150 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.78■□□□□ 0.92
RNF40O75150 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.78■□□□□ 0.92
RNF40O75150 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
RNF40O75150 AC124016.1-201ENST00000609552 612 ntBASIC20.78■□□□□ 0.92
RNF40O75150 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.78■□□□□ 0.92
RNF40O75150 AC006557.6-201ENST00000623071 864 ntBASIC20.78■□□□□ 0.92
RNF40O75150 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF40O75150 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
RNF40O75150 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF40O75150 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.78■□□□□ 0.92
RNF40O75150 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
RNF40O75150 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.78■□□□□ 0.92
RNF40O75150 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.78■□□□□ 0.92
RNF40O75150 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
RNF40O75150 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF40O75150 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
RNF40O75150 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.77■□□□□ 0.92
RNF40O75150 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF40O75150 TREX1-205ENST00000625293 1783 ntBASIC20.77■□□□□ 0.92
RNF40O75150 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.77■□□□□ 0.92
RNF40O75150 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF40O75150 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF40O75150 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF40O75150 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
RNF40O75150 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
RNF40O75150 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF40O75150 RPS2P55-201ENST00000397318 883 ntBASIC20.77■□□□□ 0.92
RNF40O75150 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.77■□□□□ 0.92
RNF40O75150 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF40O75150 AC239809.2-201ENST00000415381 517 ntBASIC20.77■□□□□ 0.92
RNF40O75150 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
RNF40O75150 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.77■□□□□ 0.92
RNF40O75150 AC107956.1-201ENST00000494359 873 ntBASIC20.77■□□□□ 0.92
RNF40O75150 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.77■□□□□ 0.92
RNF40O75150 AC233702.5-201ENST00000584107 538 ntBASIC20.77■□□□□ 0.92
RNF40O75150 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RNF40O75150 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
RNF40O75150 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.77■□□□□ 0.92
RNF40O75150 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
RNF40O75150 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
RNF40O75150 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.77■□□□□ 0.91
RNF40O75150 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.77■□□□□ 0.91
RNF40O75150 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
RNF40O75150 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF40O75150 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF40O75150 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF40O75150 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC20.76■□□□□ 0.91
RNF40O75150 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF40O75150 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.76■□□□□ 0.91
RNF40O75150 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF40O75150 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF40O75150 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF40O75150 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
RNF40O75150 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
RNF40O75150 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
RNF40O75150 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
RNF40O75150 PGM5P4-201ENST00000421970 445 ntBASIC20.76■□□□□ 0.91
RNF40O75150 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.76■□□□□ 0.91
RNF40O75150 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF40O75150 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.76■□□□□ 0.91
RNF40O75150 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF40O75150 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.76■□□□□ 0.91
RNF40O75150 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF40O75150 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.76■□□□□ 0.91
RNF40O75150 AC120498.8-201ENST00000614275 531 ntBASIC20.76■□□□□ 0.91
RNF40O75150 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF40O75150 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF40O75150 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF40O75150 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RNF40O75150 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF40O75150 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.75■□□□□ 0.91
RNF40O75150 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
RNF40O75150 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.75■□□□□ 0.91
RNF40O75150 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF40O75150 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF40O75150 TMEM179-206ENST00000616017 1645 ntBASIC20.75■□□□□ 0.91
RNF40O75150 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
RNF40O75150 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RNF40O75150 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.75■□□□□ 0.91
RNF40O75150 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.75■□□□□ 0.91
RNF40O75150 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF40O75150 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.75■□□□□ 0.91
RNF40O75150 TSPY7P-201ENST00000431358 1114 ntBASIC20.75■□□□□ 0.91
RNF40O75150 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF40O75150 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RNF40O75150 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RNF40O75150 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.75■□□□□ 0.91
RNF40O75150 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RNF40O75150 AC005829.2-201ENST00000571422 1056 ntBASIC20.75■□□□□ 0.91
RNF40O75150 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms