Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM13O60858 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM13O60858 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM13O60858 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.99■□□□□ 0.63
TRIM13O60858 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM13O60858 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM13O60858 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
TRIM13O60858 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM13O60858 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.99■□□□□ 0.63
TRIM13O60858 AC005829.2-201ENST00000571422 1056 ntBASIC18.99■□□□□ 0.63
TRIM13O60858 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC18.99■□□□□ 0.63
TRIM13O60858 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
TRIM13O60858 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
TRIM13O60858 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM13O60858 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM13O60858 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.99■□□□□ 0.63
TRIM13O60858 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM13O60858 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
TRIM13O60858 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM13O60858 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM13O60858 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM13O60858 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM13O60858 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM13O60858 SDHAP1-207ENST00000440850 2000 ntBASIC18.98■□□□□ 0.63
TRIM13O60858 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM13O60858 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM13O60858 AC093525.10-201ENST00000625130 1569 ntBASIC18.98■□□□□ 0.63
TRIM13O60858 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM13O60858 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM13O60858 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
TRIM13O60858 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM13O60858 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM13O60858 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.98■□□□□ 0.63
TRIM13O60858 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM13O60858 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM13O60858 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
TRIM13O60858 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM13O60858 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM13O60858 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM13O60858 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM13O60858 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM13O60858 Z98044.1-201ENST00000632503 1764 ntBASIC18.98■□□□□ 0.63
TRIM13O60858 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM13O60858 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.98■□□□□ 0.63
TRIM13O60858 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.98■□□□□ 0.63
TRIM13O60858 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM13O60858 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM13O60858 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM13O60858 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.98■□□□□ 0.63
TRIM13O60858 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM13O60858 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM13O60858 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM13O60858 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
TRIM13O60858 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM13O60858 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.97■□□□□ 0.63
TRIM13O60858 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM13O60858 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM13O60858 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM13O60858 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM13O60858 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM13O60858 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.97■□□□□ 0.63
TRIM13O60858 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM13O60858 MKRN4P-201ENST00000444706 1521 ntBASIC18.97■□□□□ 0.63
TRIM13O60858 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.97■□□□□ 0.63
TRIM13O60858 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM13O60858 AC004911.1-201ENST00000416316 871 ntBASIC18.97■□□□□ 0.63
TRIM13O60858 AC026271.2-201ENST00000428091 497 ntBASIC18.97■□□□□ 0.63
TRIM13O60858 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
TRIM13O60858 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM13O60858 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.97■□□□□ 0.63
TRIM13O60858 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM13O60858 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM13O60858 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM13O60858 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM13O60858 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM13O60858 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM13O60858 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.97■□□□□ 0.63
TRIM13O60858 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM13O60858 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM13O60858 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM13O60858 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM13O60858 AC007613.1-201ENST00000572811 2597 ntBASIC18.96■□□□□ 0.63
TRIM13O60858 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM13O60858 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM13O60858 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM13O60858 FP475955.4-201ENST00000623131 1990 ntBASIC18.96■□□□□ 0.63
TRIM13O60858 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM13O60858 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.96■□□□□ 0.63
TRIM13O60858 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM13O60858 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
TRIM13O60858 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM13O60858 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM13O60858 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.96■□□□□ 0.63
TRIM13O60858 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM13O60858 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM13O60858 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM13O60858 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM13O60858 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM13O60858 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM13O60858 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms