Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP2AO43633 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC21.74■■□□□ 1.07
CHMP2AO43633 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
CHMP2AO43633 AL390955.1-201ENST00000428694 934 ntBASIC21.74■■□□□ 1.07
CHMP2AO43633 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP2AO43633 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP2AO43633 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP2AO43633 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.74■■□□□ 1.07
CHMP2AO43633 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
CHMP2AO43633 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.74■■□□□ 1.07
CHMP2AO43633 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.74■■□□□ 1.07
CHMP2AO43633 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.74■■□□□ 1.07
CHMP2AO43633 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC21.74■■□□□ 1.07
CHMP2AO43633 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC21.74■■□□□ 1.07
CHMP2AO43633 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
CHMP2AO43633 AC079598.2-202ENST00000546624 1451 ntBASIC21.74■■□□□ 1.07
CHMP2AO43633 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.74■■□□□ 1.07
CHMP2AO43633 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP2AO43633 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP2AO43633 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP2AO43633 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC21.74■■□□□ 1.07
CHMP2AO43633 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP2AO43633 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC21.73■■□□□ 1.07
CHMP2AO43633 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.73■■□□□ 1.07
CHMP2AO43633 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP2AO43633 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP2AO43633 FSCN1P1-201ENST00000568912 1481 ntBASIC21.73■■□□□ 1.07
CHMP2AO43633 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
CHMP2AO43633 ZNF815P-204ENST00000434898 1737 ntBASIC21.73■■□□□ 1.07
CHMP2AO43633 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP2AO43633 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP2AO43633 UNC93B2-201ENST00000285383 730 ntBASIC21.73■■□□□ 1.07
CHMP2AO43633 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP2AO43633 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC21.73■■□□□ 1.07
CHMP2AO43633 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC21.73■■□□□ 1.07
CHMP2AO43633 AC011298.2-201ENST00000617989 482 ntBASIC21.73■■□□□ 1.07
CHMP2AO43633 AC073912.3-201ENST00000624414 853 ntBASIC21.73■■□□□ 1.07
CHMP2AO43633 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.73■■□□□ 1.07
CHMP2AO43633 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
CHMP2AO43633 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP2AO43633 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.73■■□□□ 1.07
CHMP2AO43633 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
CHMP2AO43633 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC21.72■■□□□ 1.07
CHMP2AO43633 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CHMP2AO43633 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CHMP2AO43633 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CHMP2AO43633 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CHMP2AO43633 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
CHMP2AO43633 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CHMP2AO43633 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
CHMP2AO43633 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CHMP2AO43633 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC21.72■■□□□ 1.07
CHMP2AO43633 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CHMP2AO43633 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.72■■□□□ 1.07
CHMP2AO43633 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21.72■■□□□ 1.07
CHMP2AO43633 PTPA-216ENST00000432651 857 ntTSL 2 BASIC21.72■■□□□ 1.07
CHMP2AO43633 AC008040.2-201ENST00000461049 708 ntBASIC21.72■■□□□ 1.07
CHMP2AO43633 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC21.72■■□□□ 1.07
CHMP2AO43633 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC21.72■■□□□ 1.07
CHMP2AO43633 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.72■■□□□ 1.07
CHMP2AO43633 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
CHMP2AO43633 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC21.72■■□□□ 1.07
CHMP2AO43633 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CHMP2AO43633 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
CHMP2AO43633 AC104417.2-201ENST00000562989 1793 ntBASIC21.71■■□□□ 1.07
CHMP2AO43633 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CHMP2AO43633 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CHMP2AO43633 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CHMP2AO43633 MIR1238-201ENST00000408483 83 ntBASIC21.71■■□□□ 1.07
CHMP2AO43633 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CHMP2AO43633 AC004951.3-201ENST00000418645 1148 ntBASIC21.71■■□□□ 1.07
CHMP2AO43633 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC21.71■■□□□ 1.07
CHMP2AO43633 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.71■■□□□ 1.07
CHMP2AO43633 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC21.71■■□□□ 1.07
CHMP2AO43633 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.71■■□□□ 1.07
CHMP2AO43633 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
CHMP2AO43633 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CHMP2AO43633 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
CHMP2AO43633 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CHMP2AO43633 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CHMP2AO43633 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CHMP2AO43633 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CHMP2AO43633 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CHMP2AO43633 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CHMP2AO43633 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
CHMP2AO43633 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CHMP2AO43633 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CHMP2AO43633 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CHMP2AO43633 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC21.7■■□□□ 1.06
CHMP2AO43633 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC21.7■■□□□ 1.06
CHMP2AO43633 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CHMP2AO43633 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.7■■□□□ 1.06
CHMP2AO43633 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.7■■□□□ 1.06
CHMP2AO43633 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CHMP2AO43633 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CHMP2AO43633 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
CHMP2AO43633 SDHAP1-207ENST00000440850 2000 ntBASIC21.7■■□□□ 1.06
CHMP2AO43633 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.7■■□□□ 1.06
CHMP2AO43633 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CHMP2AO43633 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms