Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC3O15379 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.8■□□□□ 0.6
HDAC3O15379 GPX1P1-201ENST00000388829 606 ntBASIC18.8■□□□□ 0.6
HDAC3O15379 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC3O15379 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
HDAC3O15379 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.8■□□□□ 0.6
HDAC3O15379 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HDAC3O15379 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC3O15379 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.8■□□□□ 0.6
HDAC3O15379 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC3O15379 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC3O15379 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC3O15379 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC3O15379 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
HDAC3O15379 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC3O15379 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
HDAC3O15379 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
HDAC3O15379 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC3O15379 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC3O15379 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC3O15379 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC3O15379 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.79■□□□□ 0.6
HDAC3O15379 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC3O15379 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC3O15379 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC3O15379 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC3O15379 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC3O15379 AC007322.1-201ENST00000426983 750 ntBASIC18.79■□□□□ 0.6
HDAC3O15379 AC006015.1-201ENST00000429970 570 ntBASIC18.79■□□□□ 0.6
HDAC3O15379 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.79■□□□□ 0.6
HDAC3O15379 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.79■□□□□ 0.6
HDAC3O15379 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC3O15379 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.79■□□□□ 0.6
HDAC3O15379 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC3O15379 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.79■□□□□ 0.6
HDAC3O15379 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
HDAC3O15379 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
HDAC3O15379 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
HDAC3O15379 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC3O15379 IRX1P1-201ENST00000438849 1838 ntBASIC18.79■□□□□ 0.6
HDAC3O15379 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
HDAC3O15379 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC3O15379 AC104417.2-201ENST00000562989 1793 ntBASIC18.78■□□□□ 0.6
HDAC3O15379 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC3O15379 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.78■□□□□ 0.6
HDAC3O15379 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
HDAC3O15379 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
HDAC3O15379 SDHAP1-207ENST00000440850 2000 ntBASIC18.78■□□□□ 0.6
HDAC3O15379 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC3O15379 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC3O15379 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.78■□□□□ 0.6
HDAC3O15379 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.78■□□□□ 0.6
HDAC3O15379 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.78■□□□□ 0.6
HDAC3O15379 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC3O15379 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC3O15379 AC093787.1-201ENST00000450396 207 ntBASIC18.78■□□□□ 0.6
HDAC3O15379 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC3O15379 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.78■□□□□ 0.6
HDAC3O15379 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
HDAC3O15379 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC3O15379 AL512353.2-201ENST00000448759 1962 ntBASIC18.78■□□□□ 0.6
HDAC3O15379 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.78■□□□□ 0.6
HDAC3O15379 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.78■□□□□ 0.6
HDAC3O15379 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC3O15379 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC3O15379 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
HDAC3O15379 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC3O15379 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.78■□□□□ 0.6
HDAC3O15379 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC3O15379 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC3O15379 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDAC3O15379 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.77■□□□□ 0.6
HDAC3O15379 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDAC3O15379 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDAC3O15379 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.77■□□□□ 0.6
HDAC3O15379 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.77■□□□□ 0.6
HDAC3O15379 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDAC3O15379 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDAC3O15379 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.77■□□□□ 0.6
HDAC3O15379 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDAC3O15379 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDAC3O15379 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDAC3O15379 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
HDAC3O15379 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDAC3O15379 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC18.77■□□□□ 0.6
HDAC3O15379 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.77■□□□□ 0.6
HDAC3O15379 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDAC3O15379 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDAC3O15379 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.77■□□□□ 0.6
HDAC3O15379 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
HDAC3O15379 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HDAC3O15379 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
HDAC3O15379 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
HDAC3O15379 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
HDAC3O15379 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.77■□□□□ 0.59
HDAC3O15379 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC3O15379 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
HDAC3O15379 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC3O15379 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.76■□□□□ 0.59
HDAC3O15379 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms