Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TMX2-CTNND1H3BSU7 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 PLK5-205ENST00000642079 1969 ntBASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 AC006128.1-201ENST00000624704 1661 ntBASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 TNXA-203ENST00000507684 2038 ntBASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 AC005521.1-201ENST00000393351 872 ntBASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 AL445675.2-201ENST00000620291 557 ntBASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TMX2-CTNND1H3BSU7 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 KRT16P6-202ENST00000425692 1426 ntBASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 KRT18P35-201ENST00000510488 1269 ntBASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 C2orf69P3-201ENST00000565542 1120 ntBASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
TMX2-CTNND1H3BSU7 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 KRT8P9-201ENST00000558927 1449 ntBASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 DGCR10-201ENST00000609839 495 ntBASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TMX2-CTNND1H3BSU7 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 YBX1P10-201ENST00000444752 975 ntBASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms