Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV3A0A0B4J244 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV3A0A0B4J244 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV3A0A0B4J244 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV3A0A0B4J244 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV3A0A0B4J244 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV3A0A0B4J244 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV3A0A0B4J244 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV3A0A0B4J244 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV3A0A0B4J244 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV3A0A0B4J244 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
TRAV3A0A0B4J244 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
TRAV3A0A0B4J244 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
TRAV3A0A0B4J244 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV3A0A0B4J244 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 AL138781.2-201ENST00000617896 1843 ntBASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 AC097658.1-201ENST00000475555 843 ntBASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 PNN-205ENST00000556530 601 ntTSL 2 BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 MIR4758-201ENST00000577688 71 ntBASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 ANKRD18DP-204ENST00000455355 1975 ntBASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
TRAV3A0A0B4J244 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 PNMA6B-201ENST00000538162 1200 ntBASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 AL138781.1-201ENST00000566567 1274 ntBASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 PFKL-212ENST00000628044 129 ntTSL 3 BASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 HLA-B-256ENST00000639848 1089 ntBASIC15.52■□□□□ 0.08
TRAV3A0A0B4J244 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV3A0A0B4J244 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC15.52■□□□□ 0.07
TRAV3A0A0B4J244 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV3A0A0B4J244 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.07
TRAV3A0A0B4J244 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV3A0A0B4J244 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
TRAV3A0A0B4J244 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.07
TRAV3A0A0B4J244 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV3A0A0B4J244 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC15.52■□□□□ 0.07
TRAV3A0A0B4J244 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV3A0A0B4J244 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV3A0A0B4J244 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV3A0A0B4J244 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV3A0A0B4J244 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC15.52■□□□□ 0.07
TRAV3A0A0B4J244 KRT8P8-201ENST00000434750 1448 ntBASIC15.51■□□□□ 0.07
TRAV3A0A0B4J244 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV3A0A0B4J244 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV3A0A0B4J244 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TRAV3A0A0B4J244 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TRAV3A0A0B4J244 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV3A0A0B4J244 FP475955.4-201ENST00000623131 1990 ntBASIC15.51■□□□□ 0.07
TRAV3A0A0B4J244 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms