Protein–RNA interactions for Protein: P31277

HOXD11, Homeobox protein Hox-D11, humanhuman

Predicted RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11P31277 CASQ1-202ENST00000467691 595 ntTSL 3 BASIC8.62□□□□□ -1.03
HOXD11P31277 RPL30P12-201ENST00000474666 353 ntBASIC8.62□□□□□ -1.03
HOXD11P31277 AL355076.1-201ENST00000484315 270 ntBASIC8.62□□□□□ -1.03
HOXD11P31277 RPL23AP80-201ENST00000495605 424 ntBASIC8.62□□□□□ -1.03
HOXD11P31277 AC093870.1-201ENST00000506837 213 ntBASIC8.62□□□□□ -1.03
HOXD11P31277 AC027801.3-201ENST00000515049 698 ntBASIC8.62□□□□□ -1.03
HOXD11P31277 RNA5SP54-201ENST00000516951 92 ntBASIC8.62□□□□□ -1.03
HOXD11P31277 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC8.62□□□□□ -1.03
HOXD11P31277 AC093331.1-201ENST00000521474 169 ntBASIC8.62□□□□□ -1.03
HOXD11P31277 AC138207.8-204ENST00000579588 527 ntBASIC8.62□□□□□ -1.03
HOXD11P31277 AC243960.5-201ENST00000597858 255 ntBASIC8.62□□□□□ -1.03
HOXD11P31277 AC099669.2-201ENST00000616549 437 ntBASIC8.62□□□□□ -1.03
HOXD11P31277 C20orf78-202ENST00000623418 606 ntTSL 2 BASIC8.62□□□□□ -1.03
HOXD11P31277 AC114774.1-201ENST00000507410 1770 ntBASIC8.62□□□□□ -1.03
HOXD11P31277 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
HOXD11P31277 LINC01105-204ENST00000444416 2695 ntTSL 2 BASIC8.62□□□□□ -1.03
HOXD11P31277 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.03
HOXD11P31277 NIPBL-202ENST00000448238 8729 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
HOXD11P31277 UBAP2L-203ENST00000361546 3864 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
HOXD11P31277 DKK2-201ENST00000285311 3638 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
HOXD11P31277 FMO5-202ENST00000369272 2168 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
HOXD11P31277 R3HDM2-207ENST00000441731 4076 ntTSL 5 BASIC8.62□□□□□ -1.03
HOXD11P31277 LIMCH1-215ENST00000512632 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.03
HOXD11P31277 BMS1P1-202ENST00000580094 4294 ntTSL 5 BASIC8.62□□□□□ -1.03
HOXD11P31277 RBFOX1-223ENST00000620507 4018 ntTSL 5 BASIC8.62□□□□□ -1.03
HOXD11P31277 POLR1B-203ENST00000409894 4457 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
HOXD11P31277 EIF3F-208ENST00000533626 7540 ntAPPRIS P1 TSL 2 BASIC8.62□□□□□ -1.03
HOXD11P31277 ZNF544-201ENST00000269829 3547 ntAPPRIS P3 TSL 1 (best) BASIC8.62□□□□□ -1.03
HOXD11P31277 ABCF2P1-201ENST00000465687 1867 ntBASIC8.62□□□□□ -1.03
HOXD11P31277 MYH8-201ENST00000403437 6041 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
HOXD11P31277 ZNF35-201ENST00000296092 2503 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HOXD11P31277 MYPN-201ENST00000354393 4596 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HOXD11P31277 PSG8-203ENST00000404209 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC8.61□□□□□ -1.03
HOXD11P31277 CDK15-203ENST00000434439 2240 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HOXD11P31277 CU634019.1-201ENST00000623095 2247 ntTSL 2 BASIC8.61□□□□□ -1.03
HOXD11P31277 CU633904.1-202ENST00000625096 2247 ntTSL 2 BASIC8.61□□□□□ -1.03
HOXD11P31277 NUMA1-201ENST00000351960 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC8.61□□□□□ -1.03
HOXD11P31277 RNF152-201ENST00000312828 9501 ntAPPRIS P1 TSL 2 BASIC8.61□□□□□ -1.03
HOXD11P31277 MCOLN2-202ENST00000370608 2871 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HOXD11P31277 TMPPE-201ENST00000342462 3962 ntAPPRIS P3 TSL 2 BASIC8.61□□□□□ -1.03
HOXD11P31277 GRIA4-206ENST00000525187 2822 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HOXD11P31277 CCDC149-204ENST00000504487 3869 ntAPPRIS ALT2 TSL 2 BASIC8.61□□□□□ -1.03
HOXD11P31277 RASGRP3-201ENST00000402538 4738 ntAPPRIS P3 TSL 1 (best) BASIC8.61□□□□□ -1.03
HOXD11P31277 TCF4-203ENST00000398339 2551 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HOXD11P31277 DDX24-211ENST00000640432 2580 ntTSL 5 BASIC8.61□□□□□ -1.03
HOXD11P31277 ADIPOQ-AS1-201ENST00000422718 3443 ntTSL 5 BASIC8.61□□□□□ -1.03
HOXD11P31277 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HOXD11P31277 MED15P9-201ENST00000424716 533 ntBASIC8.61□□□□□ -1.03
HOXD11P31277 AL357552.2-201ENST00000433876 353 ntTSL 5 BASIC8.61□□□□□ -1.03
HOXD11P31277 CYCSP12-201ENST00000437729 300 ntBASIC8.61□□□□□ -1.03
HOXD11P31277 AC009153.1-201ENST00000485799 496 ntBASIC8.61□□□□□ -1.03
HOXD11P31277 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC8.61□□□□□ -1.03
HOXD11P31277 LINC00967-204ENST00000518412 271 ntTSL 5 BASIC8.61□□□□□ -1.03
HOXD11P31277 AC016256.1-201ENST00000547971 354 ntBASIC8.61□□□□□ -1.03
HOXD11P31277 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC8.61□□□□□ -1.03
HOXD11P31277 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC8.61□□□□□ -1.03
HOXD11P31277 RPL23AP90-201ENST00000603820 236 ntBASIC8.61□□□□□ -1.03
HOXD11P31277 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC8.61□□□□□ -1.03
HOXD11P31277 AC243571.2-202ENST00000613901 575 ntTSL 4 BASIC8.61□□□□□ -1.03
HOXD11P31277 MEF2C-222ENST00000514028 3393 ntTSL 5 BASIC8.61□□□□□ -1.03
HOXD11P31277 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC8.61□□□□□ -1.03
HOXD11P31277 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC8.61□□□□□ -1.03
HOXD11P31277 ACAD10-220ENST00000549590 2888 ntTSL 5 BASIC8.61□□□□□ -1.03
HOXD11P31277 MATN2-208ENST00000520016 3495 ntAPPRIS P4 TSL 1 (best) BASIC8.61□□□□□ -1.03
HOXD11P31277 MAN1A2-201ENST00000356554 8576 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HOXD11P31277 AMPD3-202ENST00000396553 3680 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HOXD11P31277 ASTN1-204ENST00000424564 3685 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
HOXD11P31277 AC124319.2-201ENST00000575034 3651 ntTSL 2 BASIC8.61□□□□□ -1.03
HOXD11P31277 ZBTB39-201ENST00000300101 6170 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HOXD11P31277 SUPT6H-202ENST00000347486 5569 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HOXD11P31277 CACNB2-216ENST00000617363 4385 ntTSL 5 BASIC8.61□□□□□ -1.03
HOXD11P31277 FREM1-204ENST00000422223 10086 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
HOXD11P31277 UNC5C-201ENST00000453304 9875 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
HOXD11P31277 CACNA1D-203ENST00000422281 6414 ntAPPRIS ALT2 TSL 1 (best) BASIC8.6□□□□□ -1.03
HOXD11P31277 MAPK10-285ENST00000641207 2746 ntBASIC8.6□□□□□ -1.03
HOXD11P31277 ZNF615-202ENST00000391795 2698 ntTSL 2 BASIC8.6□□□□□ -1.03
HOXD11P31277 IFIT2-202ENST00000611722 3038 ntAPPRIS ALT2 TSL 5 BASIC8.6□□□□□ -1.03
HOXD11P31277 NKD1-201ENST00000268459 17105 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
HOXD11P31277 SPTAN1-202ENST00000372731 7889 ntAPPRIS P3 TSL 1 (best) BASIC8.6□□□□□ -1.03
HOXD11P31277 FHL2-207ENST00000409177 4881 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
HOXD11P31277 MKNK1-AS1-201ENST00000602433 2445 ntTSL 2 BASIC8.6□□□□□ -1.03
HOXD11P31277 AC023300.3-201ENST00000623096 5025 ntBASIC8.6□□□□□ -1.03
HOXD11P31277 USP54-201ENST00000339859 6247 ntAPPRIS P1 TSL 5 BASIC8.6□□□□□ -1.03
HOXD11P31277 FAM13C-216ENST00000618427 3458 ntAPPRIS ALT2 TSL 2 BASIC8.6□□□□□ -1.03
HOXD11P31277 GABRA6-207ENST00000523217 2393 ntTSL 5 BASIC8.6□□□□□ -1.03
HOXD11P31277 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC8.6□□□□□ -1.03
HOXD11P31277 LIMS1-203ENST00000393310 4392 ntAPPRIS P3 TSL 1 (best) BASIC8.6□□□□□ -1.03
HOXD11P31277 RNU6-1155P-201ENST00000363554 107 ntBASIC8.6□□□□□ -1.03
HOXD11P31277 MIR551B-201ENST00000384984 96 ntBASIC8.6□□□□□ -1.03
HOXD11P31277 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC8.6□□□□□ -1.03
HOXD11P31277 AL356121.1-201ENST00000442911 156 ntBASIC8.6□□□□□ -1.03
HOXD11P31277 AC108161.1-201ENST00000461060 402 ntBASIC8.6□□□□□ -1.03
HOXD11P31277 CREM-236ENST00000487763 429 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
HOXD11P31277 AC026421.1-201ENST00000519101 163 ntBASIC8.6□□□□□ -1.03
HOXD11P31277 ACTG1P15-201ENST00000570019 1063 ntBASIC8.6□□□□□ -1.03
HOXD11P31277 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC8.6□□□□□ -1.03
HOXD11P31277 AL161798.1-201ENST00000604630 131 ntBASIC8.6□□□□□ -1.03
HOXD11P31277 KCNA2-211ENST00000639233 5256 ntTSL 5 BASIC8.6□□□□□ -1.03
HOXD11P31277 MAK-201ENST00000313243 3984 ntAPPRIS P1 TSL 5 BASIC8.6□□□□□ -1.03
HOXD11P31277 RRN3-201ENST00000198767 3762 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 337.7 ms