RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 NISCHQ9Y2I1 1504 aa19.43■□□□□ 0.7
USP54-201ENST00000339859 DCAF8L2P0C7V8 631 aa18.7■□□□□ 0.58
USP54-201ENST00000339859 SHROOM4Q9ULL8 1493 aa17.36■□□□□ 0.37
USP54-201ENST00000339859 SUPT5HO00267 1087 aaKnown RBP17.18■□□□□ 0.34
USP54-201ENST00000339859 ABCC9O60706 1549 aa16.9■□□□□ 0.3
USP54-201ENST00000339859 CCDC180Q9P1Z9 1646 aa16.64■□□□□ 0.25
USP54-201ENST00000339859 FAM9AQ8IZU1 332 aaPredicted RBP16.51■□□□□ 0.23
USP54-201ENST00000339859 PABPN1Q86U42 306 aaKnown RBP eCLIP16.37■□□□□ 0.21
USP54-201ENST00000339859 EHMT2Q96KQ7 1210 aa16.27■□□□□ 0.2
USP54-201ENST00000339859 APLP2Q06481 763 aa16.21■□□□□ 0.19
USP54-201ENST00000339859 RB1CC1Q8TDY2 1594 aa16.16■□□□□ 0.18
USP54-201ENST00000339859 TRIM41Q8WV44 630 aa16.15■□□□□ 0.18
USP54-201ENST00000339859 ZCCHC6Q5VYS8 1495 aaKnown RBP16.1■□□□□ 0.17
USP54-201ENST00000339859 SCRIBQ14160 1630 aa16.06■□□□□ 0.16
USP54-201ENST00000339859 NACADO15069 1562 aa16■□□□□ 0.15
USP54-201ENST00000339859 RANGAP1P46060 587 aaPredicted RBP15.9■□□□□ 0.14
USP54-201ENST00000339859 UBTFP17480 764 aaKnown RBP15.87■□□□□ 0.13
USP54-201ENST00000339859 ATP1B4Q9UN42 357 aaPredicted RBP15.86■□□□□ 0.13
USP54-201ENST00000339859 DCAF1Q9Y4B6 1507 aa15.64■□□□□ 0.1
USP54-201ENST00000339859 TTBK1Q5TCY1 1321 aaPredicted RBP15.61■□□□□ 0.09
USP54-201ENST00000339859 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.56■□□□□ 0.08
USP54-201ENST00000339859 HNRNPUL2Q1KMD3 747 aaKnown RBP15.56■□□□□ 0.08
USP54-201ENST00000339859 FBLN2P98095 1184 aa15.46■□□□□ 0.07
USP54-201ENST00000339859 MYT1LQ9UL68 1186 aa15.45■□□□□ 0.06
USP54-201ENST00000339859 MYO15BQ96JP2 1530 aa15.41■□□□□ 0.06
USP54-201ENST00000339859 BAZ1BQ9UIG0 1483 aaKnown RBP15.39■□□□□ 0.05
USP54-201ENST00000339859 CHIC1Q5VXU3 224 aa15.37■□□□□ 0.05
USP54-201ENST00000339859 BAZ1AQ9NRL2 1556 aaPredicted RBP15.32■□□□□ 0.04
USP54-201ENST00000339859 ERCC6Q03468 1493 aa15.27■□□□□ 0.03
USP54-201ENST00000339859 RSF1Q96T23 1441 aaPredicted RBP15.19■□□□□ 0.02
USP54-201ENST00000339859 SMARCA2P51531 1590 aa15.18■□□□□ 0.02
USP54-201ENST00000339859 PCGF6Q9BYE7 350 aa15.16■□□□□ 0.02
USP54-201ENST00000339859 CCER1Q8TC90 406 aaPredicted RBP15.11■□□□□ 0.01
USP54-201ENST00000339859 LOC105371045A0A1W2PR82 267 aa15.09■□□□□ 0.01
USP54-201ENST00000339859 CSRNP3Q8WYN3 585 aa15.08■□□□□ 0
USP54-201ENST00000339859 PPARGC1BQ86YN6 1023 aaKnown RBP15.08■□□□□ 0
USP54-201ENST00000339859 ITGAEP38570 1179 aa15.07■□□□□ 0
USP54-201ENST00000339859 CHMP7Q8WUX9 453 aaPredicted RBP15.07■□□□□ 0
USP54-201ENST00000339859 NPM1P06748 294 aaKnown RBP eCLIP15.07■□□□□ 0
USP54-201ENST00000339859 CECR2Q9BXF3 1484 aa15.06■□□□□ 0
USP54-201ENST00000339859 ZEB1P37275 1124 aaPredicted RBP15.03■□□□□ -0
USP54-201ENST00000339859 CDK11AQ9UQ88 783 aaPredicted RBP15□□□□□ -0.01
USP54-201ENST00000339859 PDS5BQ9NTI5 1447 aa14.99□□□□□ -0.01
USP54-201ENST00000339859 P3H3Q8IVL6 736 aa14.97□□□□□ -0.01
USP54-201ENST00000339859 FAM50AQ14320 339 aaKnown RBP14.97□□□□□ -0.01
USP54-201ENST00000339859 MROH2BQ7Z745 1585 aa14.94□□□□□ -0.02
USP54-201ENST00000339859 TRIM26Q12899 539 aaPredicted RBP14.93□□□□□ -0.02
USP54-201ENST00000339859 WRNQ14191 1432 aaPredicted RBP eCLIP14.92□□□□□ -0.02
USP54-201ENST00000339859 SMARCA4P51532 1647 aa14.89□□□□□ -0.03
USP54-201ENST00000339859 ARID3CA6NKF2 412 aa14.88□□□□□ -0.03
USP54-201ENST00000339859 TOP2AP11388 1531 aaKnown RBP14.87□□□□□ -0.03
USP54-201ENST00000339859 KIF27Q86VH2 1401 aa14.84□□□□□ -0.03
USP54-201ENST00000339859 ATAD2BQ9ULI0 1458 aa14.84□□□□□ -0.03
USP54-201ENST00000339859 EEA1Q15075 1411 aa14.82□□□□□ -0.04
USP54-201ENST00000339859 TRIM52Q96A61 297 aa14.82□□□□□ -0.04
USP54-201ENST00000339859 CCDC88BA6NC98 1476 aa14.81□□□□□ -0.04
USP54-201ENST00000339859 WIZO95785 1651 aa14.8□□□□□ -0.04
USP54-201ENST00000339859 ESF1Q9H501 851 aaKnown RBP14.78□□□□□ -0.04
USP54-201ENST00000339859 ZNF777Q9ULD5 760 aaPredicted RBP14.78□□□□□ -0.04
USP54-201ENST00000339859 CADPSQ9ULU8 1353 aa14.77□□□□□ -0.05
USP54-201ENST00000339859 EIF4G1Q04637 1599 aaKnown RBP14.76□□□□□ -0.05
USP54-201ENST00000339859 CEP164Q9UPV0 1460 aa14.75□□□□□ -0.05
USP54-201ENST00000339859 GOLGA3Q08378 1498 aa14.69□□□□□ -0.06
USP54-201ENST00000339859 CUX2O14529 1486 aa14.68□□□□□ -0.06
USP54-201ENST00000339859 SOGA1O94964 1423 aa14.66□□□□□ -0.06
USP54-201ENST00000339859 PELP1Q8IZL8 1130 aaKnown RBP14.66□□□□□ -0.06
USP54-201ENST00000339859 ABCC8Q09428 1581 aa14.65□□□□□ -0.06
USP54-201ENST00000339859 POLR3GLQ9BT43 218 aa14.63□□□□□ -0.07
USP54-201ENST00000339859 CC2D2AQ9P2K1 1620 aa14.63□□□□□ -0.07
USP54-201ENST00000339859 NCAPD3P42695 1498 aa14.63□□□□□ -0.07
USP54-201ENST00000339859 FANCD2Q9BXW9 1451 aa14.62□□□□□ -0.07
USP54-201ENST00000339859 BCANQ96GW7 911 aa14.61□□□□□ -0.07
USP54-201ENST00000339859 PLEKHD1A6NEE1 506 aa14.6□□□□□ -0.07
USP54-201ENST00000339859 MTUS2Q5JR59 1369 aa14.59□□□□□ -0.07
USP54-201ENST00000339859 CLIP1P30622 1438 aa14.59□□□□□ -0.07
USP54-201ENST00000339859 SLC4A1APQ9BWU0 796 aaKnown RBP14.59□□□□□ -0.07
USP54-201ENST00000339859 CARMIL1Q5VZK9 1371 aa14.57□□□□□ -0.08
USP54-201ENST00000339859 KCNH8Q96L42 1107 aa14.55□□□□□ -0.08
USP54-201ENST00000339859 STAG3Q9UJ98 1225 aa14.53□□□□□ -0.08
USP54-201ENST00000339859 CARMIL2Q6F5E8 1435 aa14.53□□□□□ -0.08
USP54-201ENST00000339859 TSPY4P0CV99 314 aa14.52□□□□□ -0.09
USP54-201ENST00000339859 TSPY10P0CW01 314 aa14.52□□□□□ -0.09
USP54-201ENST00000339859 HMGXB3Q12766 1538 aa14.49□□□□□ -0.09
USP54-201ENST00000339859 TDRD9Q8NDG6 1382 aaKnown RBP14.49□□□□□ -0.09
USP54-201ENST00000339859 PLPPR3Q6T4P5 718 aa14.49□□□□□ -0.09
USP54-201ENST00000339859 NEUROD1Q13562 356 aa14.48□□□□□ -0.09
USP54-201ENST00000339859 TRHP20396 242 aaPredicted RBP14.48□□□□□ -0.09
USP54-201ENST00000339859 BICRAQ9NZM4 1560 aa14.45□□□□□ -0.1
USP54-201ENST00000339859 ZNF326Q5BKZ1 582 aaKnown RBP14.44□□□□□ -0.1
USP54-201ENST00000339859 TNIKQ9UKE5 1360 aa14.44□□□□□ -0.1
USP54-201ENST00000339859 CEP162Q5TB80 1403 aa14.42□□□□□ -0.1
USP54-201ENST00000339859 FHAD1B1AJZ9 1412 aa14.42□□□□□ -0.1
USP54-201ENST00000339859 CHGAP10645 457 aaKnown RBP14.4□□□□□ -0.1
USP54-201ENST00000339859 CENPBP07199 599 aaPredicted RBP14.4□□□□□ -0.1
USP54-201ENST00000339859 MRC2Q9UBG0 1479 aa14.39□□□□□ -0.11
USP54-201ENST00000339859 ARID4BQ4LE39 1312 aaPredicted RBP14.39□□□□□ -0.11
USP54-201ENST00000339859 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.38□□□□□ -0.11
USP54-201ENST00000339859 UNC13AQ9UPW8 1703 aa14.37□□□□□ -0.11
USP54-201ENST00000339859 OSCARQ8IYS5 282 aa14.37□□□□□ -0.11
USP54-201ENST00000339859 ACIN1Q9UKV3 1341 aaKnown RBP14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms