Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LIMA1Q9UHB6 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LIMA1Q9UHB6 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.14■□□□□ 0.97
LIMA1Q9UHB6 KRT18P16-201ENST00000510337 1294 ntBASIC21.14■□□□□ 0.97
LIMA1Q9UHB6 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
LIMA1Q9UHB6 HLA-B-256ENST00000639848 1089 ntBASIC21.14■□□□□ 0.97
LIMA1Q9UHB6 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC21.14■□□□□ 0.97
LIMA1Q9UHB6 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
LIMA1Q9UHB6 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LIMA1Q9UHB6 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LIMA1Q9UHB6 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
LIMA1Q9UHB6 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
LIMA1Q9UHB6 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LIMA1Q9UHB6 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
LIMA1Q9UHB6 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
LIMA1Q9UHB6 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LIMA1Q9UHB6 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.14■□□□□ 0.97
LIMA1Q9UHB6 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
LIMA1Q9UHB6 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LIMA1Q9UHB6 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
LIMA1Q9UHB6 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC21.13■□□□□ 0.97
LIMA1Q9UHB6 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
LIMA1Q9UHB6 RHEB-204ENST00000472642 900 ntTSL 3 BASIC21.13■□□□□ 0.97
LIMA1Q9UHB6 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.13■□□□□ 0.97
LIMA1Q9UHB6 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LIMA1Q9UHB6 AC092368.3-202ENST00000574180 1591 ntBASIC21.13■□□□□ 0.97
LIMA1Q9UHB6 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LIMA1Q9UHB6 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LIMA1Q9UHB6 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC21.13■□□□□ 0.97
LIMA1Q9UHB6 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 UBQLN4P1-201ENST00000461599 1801 ntBASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC21.12■□□□□ 0.97
LIMA1Q9UHB6 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 Z98044.1-201ENST00000632503 1764 ntBASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 AC006970.2-201ENST00000450065 779 ntBASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 REXO2-208ENST00000539754 791 ntTSL 2 BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 AC009113.1-201ENST00000570267 2443 ntBASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LIMA1Q9UHB6 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 TSPY6P-201ENST00000448518 926 ntBASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms