Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.36■□□□□ 0.85
SMARCAL1Q9NZC9 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCAL1Q9NZC9 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCAL1Q9NZC9 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.36■□□□□ 0.85
SMARCAL1Q9NZC9 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.36■□□□□ 0.85
SMARCAL1Q9NZC9 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCAL1Q9NZC9 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCAL1Q9NZC9 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.36■□□□□ 0.85
SMARCAL1Q9NZC9 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCAL1Q9NZC9 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCAL1Q9NZC9 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCAL1Q9NZC9 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCAL1Q9NZC9 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCAL1Q9NZC9 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCAL1Q9NZC9 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCAL1Q9NZC9 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
SMARCAL1Q9NZC9 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.36■□□□□ 0.85
SMARCAL1Q9NZC9 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 AC116351.2-201ENST00000606540 1585 ntBASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCAL1Q9NZC9 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 AL390961.4-201ENST00000623958 2535 ntBASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 AC093787.1-201ENST00000450396 207 ntBASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 AC073111.5-205ENST00000641717 521 ntBASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 AC010980.2-201ENST00000587099 1412 ntBASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCAL1Q9NZC9 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMARCAL1Q9NZC9 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SMARCAL1Q9NZC9 ZNF815P-204ENST00000434898 1737 ntBASIC20.33■□□□□ 0.85
SMARCAL1Q9NZC9 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMARCAL1Q9NZC9 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMARCAL1Q9NZC9 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
SMARCAL1Q9NZC9 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMARCAL1Q9NZC9 AC135050.7-201ENST00000624508 2218 ntBASIC20.33■□□□□ 0.85
SMARCAL1Q9NZC9 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SMARCAL1Q9NZC9 SDHAP1-207ENST00000440850 2000 ntBASIC20.33■□□□□ 0.85
SMARCAL1Q9NZC9 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMARCAL1Q9NZC9 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.33■□□□□ 0.85
SMARCAL1Q9NZC9 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.33■□□□□ 0.85
SMARCAL1Q9NZC9 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.33■□□□□ 0.85
SMARCAL1Q9NZC9 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SMARCAL1Q9NZC9 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms