Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 HLA-A-209ENST00000638375 975 ntBASIC20.79■□□□□ 0.92
SIX2Q9NPC8 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SIX2Q9NPC8 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SIX2Q9NPC8 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.78■□□□□ 0.92
SIX2Q9NPC8 CROCCP3-202ENST00000420820 1947 ntBASIC20.78■□□□□ 0.92
SIX2Q9NPC8 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SIX2Q9NPC8 AC006333.2-201ENST00000607957 2099 ntBASIC20.78■□□□□ 0.92
SIX2Q9NPC8 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
SIX2Q9NPC8 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.78■□□□□ 0.92
SIX2Q9NPC8 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.78■□□□□ 0.92
SIX2Q9NPC8 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SIX2Q9NPC8 ESRRAP1-201ENST00000400596 1257 ntBASIC20.78■□□□□ 0.92
SIX2Q9NPC8 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.78■□□□□ 0.92
SIX2Q9NPC8 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.78■□□□□ 0.92
SIX2Q9NPC8 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.78■□□□□ 0.92
SIX2Q9NPC8 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.78■□□□□ 0.92
SIX2Q9NPC8 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SIX2Q9NPC8 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.78■□□□□ 0.92
SIX2Q9NPC8 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
SIX2Q9NPC8 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.78■□□□□ 0.92
SIX2Q9NPC8 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 IRX1P1-201ENST00000438849 1838 ntBASIC20.77■□□□□ 0.92
SIX2Q9NPC8 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SIX2Q9NPC8 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
SIX2Q9NPC8 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
SIX2Q9NPC8 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
SIX2Q9NPC8 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.76■□□□□ 0.91
SIX2Q9NPC8 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SIX2Q9NPC8 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.76■□□□□ 0.91
SIX2Q9NPC8 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SIX2Q9NPC8 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX2Q9NPC8 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX2Q9NPC8 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SIX2Q9NPC8 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX2Q9NPC8 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.76■□□□□ 0.91
SIX2Q9NPC8 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.76■□□□□ 0.91
SIX2Q9NPC8 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.76■□□□□ 0.91
SIX2Q9NPC8 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
SIX2Q9NPC8 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.76■□□□□ 0.91
SIX2Q9NPC8 AL023875.1-201ENST00000640777 796 ntBASIC20.76■□□□□ 0.91
SIX2Q9NPC8 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX2Q9NPC8 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SIX2Q9NPC8 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX2Q9NPC8 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX2Q9NPC8 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
SIX2Q9NPC8 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SIX2Q9NPC8 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX2Q9NPC8 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms