Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.02■□□□□ 0.32
MMP28Q9H239 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
MMP28Q9H239 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
MMP28Q9H239 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MMP28Q9H239 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MMP28Q9H239 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
MMP28Q9H239 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.02■□□□□ 0.32
MMP28Q9H239 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
MMP28Q9H239 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.02■□□□□ 0.32
MMP28Q9H239 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
MMP28Q9H239 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MMP28Q9H239 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MMP28Q9H239 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MMP28Q9H239 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC17.02■□□□□ 0.32
MMP28Q9H239 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
MMP28Q9H239 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MMP28Q9H239 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MMP28Q9H239 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.02■□□□□ 0.32
MMP28Q9H239 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
MMP28Q9H239 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
MMP28Q9H239 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MMP28Q9H239 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.02■□□□□ 0.31
MMP28Q9H239 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MMP28Q9H239 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
MMP28Q9H239 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
MMP28Q9H239 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.02■□□□□ 0.31
MMP28Q9H239 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.02■□□□□ 0.31
MMP28Q9H239 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
MMP28Q9H239 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.02■□□□□ 0.31
MMP28Q9H239 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
MMP28Q9H239 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
MMP28Q9H239 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
MMP28Q9H239 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.01■□□□□ 0.31
MMP28Q9H239 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
MMP28Q9H239 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC17.01■□□□□ 0.31
MMP28Q9H239 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC17.01■□□□□ 0.31
MMP28Q9H239 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC17.01■□□□□ 0.31
MMP28Q9H239 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC17.01■□□□□ 0.31
MMP28Q9H239 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.01■□□□□ 0.31
MMP28Q9H239 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.01■□□□□ 0.31
MMP28Q9H239 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.01■□□□□ 0.31
MMP28Q9H239 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MMP28Q9H239 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17■□□□□ 0.31
MMP28Q9H239 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17■□□□□ 0.31
MMP28Q9H239 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MMP28Q9H239 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17■□□□□ 0.31
MMP28Q9H239 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
MMP28Q9H239 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MMP28Q9H239 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
MMP28Q9H239 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC17■□□□□ 0.31
MMP28Q9H239 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC17■□□□□ 0.31
MMP28Q9H239 SLC7A5P2-201ENST00000553010 536 ntBASIC17■□□□□ 0.31
MMP28Q9H239 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
MMP28Q9H239 VPS53-216ENST00000574029 585 ntTSL 4 BASIC17■□□□□ 0.31
MMP28Q9H239 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC17■□□□□ 0.31
MMP28Q9H239 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC17■□□□□ 0.31
MMP28Q9H239 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
MMP28Q9H239 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17■□□□□ 0.31
MMP28Q9H239 CD37-204ENST00000535669 1674 ntTSL 2 BASIC17■□□□□ 0.31
MMP28Q9H239 AC006333.2-201ENST00000607957 2099 ntBASIC17■□□□□ 0.31
MMP28Q9H239 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17■□□□□ 0.31
MMP28Q9H239 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MMP28Q9H239 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
MMP28Q9H239 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.99■□□□□ 0.31
MMP28Q9H239 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.99■□□□□ 0.31
MMP28Q9H239 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.99■□□□□ 0.31
MMP28Q9H239 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MMP28Q9H239 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
MMP28Q9H239 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MMP28Q9H239 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.99■□□□□ 0.31
MMP28Q9H239 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
MMP28Q9H239 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MMP28Q9H239 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
MMP28Q9H239 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MMP28Q9H239 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
MMP28Q9H239 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MMP28Q9H239 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MMP28Q9H239 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC16.99■□□□□ 0.31
MMP28Q9H239 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC16.99■□□□□ 0.31
MMP28Q9H239 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MMP28Q9H239 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms