Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL12A1Q99715 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.95■□□□□ 0.3
COL12A1Q99715 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL12A1Q99715 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL12A1Q99715 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL12A1Q99715 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.95■□□□□ 0.3
COL12A1Q99715 MIR3197-201ENST00000582241 73 ntBASIC16.95■□□□□ 0.3
COL12A1Q99715 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.95■□□□□ 0.3
COL12A1Q99715 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL12A1Q99715 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL12A1Q99715 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL12A1Q99715 PMS2P7-201ENST00000506558 1336 ntBASIC16.95■□□□□ 0.3
COL12A1Q99715 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC16.95■□□□□ 0.3
COL12A1Q99715 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL12A1Q99715 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL12A1Q99715 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
COL12A1Q99715 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.95■□□□□ 0.3
COL12A1Q99715 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL12A1Q99715 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.95■□□□□ 0.3
COL12A1Q99715 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.95■□□□□ 0.3
COL12A1Q99715 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.95■□□□□ 0.3
COL12A1Q99715 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL12A1Q99715 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
COL12A1Q99715 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL12A1Q99715 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
COL12A1Q99715 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC16.94■□□□□ 0.3
COL12A1Q99715 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC16.94■□□□□ 0.3
COL12A1Q99715 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL12A1Q99715 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL12A1Q99715 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL12A1Q99715 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
COL12A1Q99715 AL353801.3-201ENST00000609898 542 ntBASIC16.94■□□□□ 0.3
COL12A1Q99715 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC16.94■□□□□ 0.3
COL12A1Q99715 KRT8P41-201ENST00000533985 1514 ntBASIC16.94■□□□□ 0.3
COL12A1Q99715 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC16.94■□□□□ 0.3
COL12A1Q99715 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL12A1Q99715 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.94■□□□□ 0.3
COL12A1Q99715 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.94■□□□□ 0.3
COL12A1Q99715 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL12A1Q99715 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL12A1Q99715 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL12A1Q99715 CHCHD2P8-201ENST00000429873 447 ntBASIC16.93■□□□□ 0.3
COL12A1Q99715 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
COL12A1Q99715 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.93■□□□□ 0.3
COL12A1Q99715 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
COL12A1Q99715 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.93■□□□□ 0.3
COL12A1Q99715 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC16.93■□□□□ 0.3
COL12A1Q99715 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL12A1Q99715 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL12A1Q99715 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL12A1Q99715 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL12A1Q99715 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC16.93■□□□□ 0.3
COL12A1Q99715 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL12A1Q99715 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL12A1Q99715 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL12A1Q99715 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL12A1Q99715 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.93■□□□□ 0.3
COL12A1Q99715 HLA-J-202ENST00000469281 1241 ntBASIC16.93■□□□□ 0.3
COL12A1Q99715 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.93■□□□□ 0.3
COL12A1Q99715 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.93■□□□□ 0.3
COL12A1Q99715 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL12A1Q99715 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL12A1Q99715 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL12A1Q99715 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL12A1Q99715 RNPS1P1-201ENST00000507437 918 ntBASIC16.93■□□□□ 0.3
COL12A1Q99715 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.93■□□□□ 0.3
COL12A1Q99715 TERC-201ENST00000602385 541 ntBASIC16.93■□□□□ 0.3
COL12A1Q99715 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.93■□□□□ 0.3
COL12A1Q99715 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL12A1Q99715 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.92■□□□□ 0.3
COL12A1Q99715 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL12A1Q99715 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL12A1Q99715 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC16.92■□□□□ 0.3
COL12A1Q99715 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
COL12A1Q99715 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL12A1Q99715 RASA4DP-201ENST00000460726 1199 ntBASIC16.92■□□□□ 0.3
COL12A1Q99715 HLA-J-203ENST00000494367 1087 ntBASIC16.92■□□□□ 0.3
COL12A1Q99715 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC16.92■□□□□ 0.3
COL12A1Q99715 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL12A1Q99715 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.92■□□□□ 0.3
COL12A1Q99715 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
COL12A1Q99715 AF106564.1-201ENST00000607058 2553 ntBASIC16.92■□□□□ 0.3
COL12A1Q99715 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL12A1Q99715 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.92■□□□□ 0.3
COL12A1Q99715 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL12A1Q99715 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL12A1Q99715 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL12A1Q99715 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL12A1Q99715 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL12A1Q99715 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL12A1Q99715 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL12A1Q99715 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL12A1Q99715 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
COL12A1Q99715 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.92■□□□□ 0.3
COL12A1Q99715 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL12A1Q99715 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.92■□□□□ 0.3
COL12A1Q99715 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.92■□□□□ 0.3
COL12A1Q99715 AL691403.2-201ENST00000618460 490 ntBASIC16.92■□□□□ 0.3
COL12A1Q99715 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL12A1Q99715 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms