Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
CCDC42Q96M95 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC42Q96M95 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.85■□□□□ 0.93
CCDC42Q96M95 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC42Q96M95 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC42Q96M95 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
CCDC42Q96M95 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC42Q96M95 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC42Q96M95 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC42Q96M95 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC42Q96M95 MKRN4P-201ENST00000444706 1521 ntBASIC20.84■□□□□ 0.93
CCDC42Q96M95 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.84■□□□□ 0.93
CCDC42Q96M95 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC42Q96M95 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC42Q96M95 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC42Q96M95 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC42Q96M95 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC42Q96M95 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC42Q96M95 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.84■□□□□ 0.93
CCDC42Q96M95 RARRES2P6-201ENST00000567333 442 ntBASIC20.84■□□□□ 0.93
CCDC42Q96M95 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC42Q96M95 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC42Q96M95 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC42Q96M95 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC42Q96M95 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC42Q96M95 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC42Q96M95 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
CCDC42Q96M95 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC42Q96M95 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC42Q96M95 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.93
CCDC42Q96M95 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC42Q96M95 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC42Q96M95 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
CCDC42Q96M95 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC42Q96M95 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC42Q96M95 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.83■□□□□ 0.93
CCDC42Q96M95 AL162430.1-201ENST00000480705 870 ntBASIC20.83■□□□□ 0.93
CCDC42Q96M95 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC42Q96M95 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC42Q96M95 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC42Q96M95 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC42Q96M95 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC42Q96M95 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC42Q96M95 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC42Q96M95 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC42Q96M95 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.83■□□□□ 0.92
CCDC42Q96M95 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC42Q96M95 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.83■□□□□ 0.92
CCDC42Q96M95 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.83■□□□□ 0.92
CCDC42Q96M95 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.83■□□□□ 0.92
CCDC42Q96M95 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC42Q96M95 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC42Q96M95 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
CCDC42Q96M95 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC42Q96M95 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC42Q96M95 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.82■□□□□ 0.92
CCDC42Q96M95 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
CCDC42Q96M95 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC42Q96M95 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC42Q96M95 BX276092.2-201ENST00000417668 665 ntBASIC20.82■□□□□ 0.92
CCDC42Q96M95 AC073210.2-201ENST00000430369 194 ntBASIC20.82■□□□□ 0.92
CCDC42Q96M95 AC005829.2-201ENST00000571422 1056 ntBASIC20.82■□□□□ 0.92
CCDC42Q96M95 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC42Q96M95 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.82■□□□□ 0.92
CCDC42Q96M95 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC42Q96M95 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC42Q96M95 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC42Q96M95 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC42Q96M95 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC42Q96M95 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
CCDC42Q96M95 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC42Q96M95 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC42Q96M95 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.81■□□□□ 0.92
CCDC42Q96M95 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.81■□□□□ 0.92
CCDC42Q96M95 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC42Q96M95 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
CCDC42Q96M95 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.81■□□□□ 0.92
CCDC42Q96M95 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.81■□□□□ 0.92
CCDC42Q96M95 AC105036.2-201ENST00000569468 176 ntBASIC20.81■□□□□ 0.92
CCDC42Q96M95 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
CCDC42Q96M95 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC42Q96M95 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC42Q96M95 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC42Q96M95 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC42Q96M95 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC42Q96M95 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC42Q96M95 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CCDC42Q96M95 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
CCDC42Q96M95 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
CCDC42Q96M95 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
CCDC42Q96M95 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC42Q96M95 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC42Q96M95 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC42Q96M95 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
CCDC42Q96M95 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.8■□□□□ 0.92
CCDC42Q96M95 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CCDC42Q96M95 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC42Q96M95 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
CCDC42Q96M95 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC42Q96M95 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms