Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE4Q96A23 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE4Q96A23 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.38■□□□□ 0.37
CPNE4Q96A23 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CPNE4Q96A23 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CPNE4Q96A23 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE4Q96A23 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE4Q96A23 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE4Q96A23 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE4Q96A23 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE4Q96A23 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE4Q96A23 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE4Q96A23 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE4Q96A23 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE4Q96A23 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 FAM197Y1-201ENST00000421178 764 ntBASIC17.37■□□□□ 0.37
CPNE4Q96A23 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 SNORA78-201ENST00000459373 127 ntBASIC17.37■□□□□ 0.37
CPNE4Q96A23 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE4Q96A23 AC026271.3-201ENST00000571884 352 ntBASIC17.37■□□□□ 0.37
CPNE4Q96A23 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 AC131212.4-201ENST00000623606 975 ntBASIC17.37■□□□□ 0.37
CPNE4Q96A23 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 AL031985.4-201ENST00000642138 673 ntBASIC17.37■□□□□ 0.37
CPNE4Q96A23 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE4Q96A23 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE4Q96A23 KRT17P2-201ENST00000300992 1314 ntBASIC17.37■□□□□ 0.37
CPNE4Q96A23 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE4Q96A23 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CPNE4Q96A23 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CPNE4Q96A23 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.36■□□□□ 0.37
CPNE4Q96A23 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.36■□□□□ 0.37
CPNE4Q96A23 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CPNE4Q96A23 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CPNE4Q96A23 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE4Q96A23 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.36■□□□□ 0.37
CPNE4Q96A23 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE4Q96A23 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE4Q96A23 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE4Q96A23 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CPNE4Q96A23 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE4Q96A23 AL355355.2-201ENST00000442321 338 ntBASIC17.36■□□□□ 0.37
CPNE4Q96A23 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE4Q96A23 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.36■□□□□ 0.37
CPNE4Q96A23 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.36■□□□□ 0.37
CPNE4Q96A23 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE4Q96A23 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.36■□□□□ 0.37
CPNE4Q96A23 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.36■□□□□ 0.37
CPNE4Q96A23 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE4Q96A23 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE4Q96A23 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE4Q96A23 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE4Q96A23 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE4Q96A23 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE4Q96A23 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE4Q96A23 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE4Q96A23 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE4Q96A23 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE4Q96A23 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE4Q96A23 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPNE4Q96A23 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.36■□□□□ 0.37
CPNE4Q96A23 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17.36■□□□□ 0.37
CPNE4Q96A23 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE4Q96A23 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE4Q96A23 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE4Q96A23 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE4Q96A23 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE4Q96A23 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE4Q96A23 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.35■□□□□ 0.37
CPNE4Q96A23 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
CPNE4Q96A23 AC026471.5-201ENST00000615068 467 ntBASIC17.35■□□□□ 0.37
CPNE4Q96A23 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.35■□□□□ 0.37
CPNE4Q96A23 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CPNE4Q96A23 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE4Q96A23 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE4Q96A23 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.35■□□□□ 0.37
CPNE4Q96A23 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE4Q96A23 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC17.35■□□□□ 0.37
CPNE4Q96A23 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE4Q96A23 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE4Q96A23 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPNE4Q96A23 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPNE4Q96A23 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CPNE4Q96A23 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPNE4Q96A23 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms