Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 KRT8P20-201ENST00000423953 1409 ntBASIC5.96□□□□□ -1.46
SYNE1Q8NF91 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
SYNE1Q8NF91 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 LINC01568-207ENST00000641790 1380 ntBASIC5.95□□□□□ -1.46
SYNE1Q8NF91 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 AL031133.1-201ENST00000406807 723 ntBASIC5.95□□□□□ -1.46
SYNE1Q8NF91 TMA16-209ENST00000513272 803 ntTSL 2 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 DPP3P2-201ENST00000416030 1696 ntBASIC5.95□□□□□ -1.46
SYNE1Q8NF91 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 AC073130.3-201ENST00000624389 2278 ntBASIC5.95□□□□□ -1.46
SYNE1Q8NF91 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 KRT18P56-201ENST00000507275 550 ntBASIC5.95□□□□□ -1.46
SYNE1Q8NF91 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 NIFKP9-201ENST00000419265 221 ntBASIC5.95□□□□□ -1.46
SYNE1Q8NF91 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 MESTP1-201ENST00000404287 994 ntBASIC5.95□□□□□ -1.46
SYNE1Q8NF91 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 AP005242.2-201ENST00000580065 1175 ntBASIC5.95□□□□□ -1.46
SYNE1Q8NF91 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC5.95□□□□□ -1.46
SYNE1Q8NF91 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
SYNE1Q8NF91 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms