Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 AC004980.1-204ENST00000429707 299 ntBASIC19.86■□□□□ 0.77
RTL3Q8N8U3 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.86■□□□□ 0.77
RTL3Q8N8U3 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 AC113410.3-201ENST00000623366 203 ntBASIC19.86■□□□□ 0.77
RTL3Q8N8U3 CR392000.1-201ENST00000624770 1228 ntBASIC19.86■□□□□ 0.77
RTL3Q8N8U3 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RTL3Q8N8U3 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RTL3Q8N8U3 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RTL3Q8N8U3 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.85■□□□□ 0.77
RTL3Q8N8U3 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.85■□□□□ 0.77
RTL3Q8N8U3 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
RTL3Q8N8U3 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RTL3Q8N8U3 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.85■□□□□ 0.77
RTL3Q8N8U3 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.85■□□□□ 0.77
RTL3Q8N8U3 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RTL3Q8N8U3 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
RTL3Q8N8U3 FAM197Y1-201ENST00000421178 764 ntBASIC19.85■□□□□ 0.77
RTL3Q8N8U3 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
RTL3Q8N8U3 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.85■□□□□ 0.77
RTL3Q8N8U3 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.85■□□□□ 0.77
RTL3Q8N8U3 CD177P1-201ENST00000606252 935 ntBASIC19.85■□□□□ 0.77
RTL3Q8N8U3 AC131212.4-201ENST00000623606 975 ntBASIC19.85■□□□□ 0.77
RTL3Q8N8U3 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
RTL3Q8N8U3 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
RTL3Q8N8U3 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RTL3Q8N8U3 SDHAP1-207ENST00000440850 2000 ntBASIC19.85■□□□□ 0.77
RTL3Q8N8U3 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
RTL3Q8N8U3 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 AC066615.1-201ENST00000640911 628 ntBASIC19.84■□□□□ 0.77
RTL3Q8N8U3 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RTL3Q8N8U3 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
RTL3Q8N8U3 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
RTL3Q8N8U3 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
RTL3Q8N8U3 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.83■□□□□ 0.77
RTL3Q8N8U3 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
RTL3Q8N8U3 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
RTL3Q8N8U3 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
RTL3Q8N8U3 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
RTL3Q8N8U3 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
RTL3Q8N8U3 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.83■□□□□ 0.77
RTL3Q8N8U3 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.83■□□□□ 0.77
RTL3Q8N8U3 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.83■□□□□ 0.77
RTL3Q8N8U3 Z85996.1-201ENST00000494644 937 ntBASIC19.83■□□□□ 0.77
RTL3Q8N8U3 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
RTL3Q8N8U3 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.83■□□□□ 0.77
RTL3Q8N8U3 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
RTL3Q8N8U3 AC026271.3-201ENST00000571884 352 ntBASIC19.83■□□□□ 0.77
RTL3Q8N8U3 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
RTL3Q8N8U3 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.83■□□□□ 0.77
RTL3Q8N8U3 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.83■□□□□ 0.77
RTL3Q8N8U3 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.83■□□□□ 0.77
RTL3Q8N8U3 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
RTL3Q8N8U3 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
RTL3Q8N8U3 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
RTL3Q8N8U3 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
RTL3Q8N8U3 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms