Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 AC020907.5-201ENST00000624372 1936 ntBASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.05■□□□□ 0.8
NPAS3Q8IXF0 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 KRT8P45-201ENST00000414328 1447 ntBASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 AL671277.2-201ENST00000458060 996 ntBASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 KRT18P56-201ENST00000507275 550 ntBASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 AC008622.2-201ENST00000617006 1229 ntBASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NPAS3Q8IXF0 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 IER3-202ENST00000376377 1350 ntBASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPAS3Q8IXF0 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.02■□□□□ 0.8
NPAS3Q8IXF0 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
NPAS3Q8IXF0 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
NPAS3Q8IXF0 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
NPAS3Q8IXF0 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
NPAS3Q8IXF0 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
NPAS3Q8IXF0 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
NPAS3Q8IXF0 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
NPAS3Q8IXF0 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.01■□□□□ 0.79
NPAS3Q8IXF0 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPAS3Q8IXF0 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.01■□□□□ 0.79
NPAS3Q8IXF0 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPAS3Q8IXF0 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
NPAS3Q8IXF0 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPAS3Q8IXF0 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.01■□□□□ 0.79
NPAS3Q8IXF0 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
NPAS3Q8IXF0 KRT18P38-201ENST00000449496 1282 ntBASIC20.01■□□□□ 0.79
NPAS3Q8IXF0 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.01■□□□□ 0.79
NPAS3Q8IXF0 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.01■□□□□ 0.79
NPAS3Q8IXF0 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.01■□□□□ 0.79
NPAS3Q8IXF0 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
NPAS3Q8IXF0 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPAS3Q8IXF0 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPAS3Q8IXF0 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
NPAS3Q8IXF0 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPAS3Q8IXF0 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.01■□□□□ 0.79
NPAS3Q8IXF0 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
NPAS3Q8IXF0 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
NPAS3Q8IXF0 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
NPAS3Q8IXF0 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20■□□□□ 0.79
NPAS3Q8IXF0 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPAS3Q8IXF0 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
NPAS3Q8IXF0 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms