Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LDB1Q86U70 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
LDB1Q86U70 AC018445.3-201ENST00000624177 1945 ntBASIC19.31■□□□□ 0.68
LDB1Q86U70 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.31■□□□□ 0.68
LDB1Q86U70 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LDB1Q86U70 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.31■□□□□ 0.68
LDB1Q86U70 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LDB1Q86U70 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
LDB1Q86U70 TEX21P-204ENST00000641479 1693 ntBASIC19.3■□□□□ 0.68
LDB1Q86U70 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LDB1Q86U70 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.3■□□□□ 0.68
LDB1Q86U70 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LDB1Q86U70 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.3■□□□□ 0.68
LDB1Q86U70 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LDB1Q86U70 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.3■□□□□ 0.68
LDB1Q86U70 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.3■□□□□ 0.68
LDB1Q86U70 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
LDB1Q86U70 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.3■□□□□ 0.68
LDB1Q86U70 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LDB1Q86U70 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
LDB1Q86U70 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LDB1Q86U70 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LDB1Q86U70 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
LDB1Q86U70 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LDB1Q86U70 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LDB1Q86U70 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LDB1Q86U70 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.3■□□□□ 0.68
LDB1Q86U70 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LDB1Q86U70 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
LDB1Q86U70 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LDB1Q86U70 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LDB1Q86U70 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.29■□□□□ 0.68
LDB1Q86U70 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LDB1Q86U70 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
LDB1Q86U70 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.29■□□□□ 0.68
LDB1Q86U70 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
LDB1Q86U70 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.29■□□□□ 0.68
LDB1Q86U70 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LDB1Q86U70 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.29■□□□□ 0.68
LDB1Q86U70 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
LDB1Q86U70 KRASP1-201ENST00000407852 552 ntBASIC19.29■□□□□ 0.68
LDB1Q86U70 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
LDB1Q86U70 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LDB1Q86U70 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
LDB1Q86U70 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LDB1Q86U70 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.29■□□□□ 0.68
LDB1Q86U70 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
LDB1Q86U70 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LDB1Q86U70 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.29■□□□□ 0.68
LDB1Q86U70 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.29■□□□□ 0.68
LDB1Q86U70 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LDB1Q86U70 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
LDB1Q86U70 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LDB1Q86U70 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.28■□□□□ 0.68
LDB1Q86U70 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
LDB1Q86U70 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LDB1Q86U70 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LDB1Q86U70 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
LDB1Q86U70 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LDB1Q86U70 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
LDB1Q86U70 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LDB1Q86U70 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LDB1Q86U70 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.28■□□□□ 0.68
LDB1Q86U70 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.28■□□□□ 0.68
LDB1Q86U70 POU5F1P3-201ENST00000428824 1078 ntBASIC19.28■□□□□ 0.68
LDB1Q86U70 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.28■□□□□ 0.68
LDB1Q86U70 AC128676.1-201ENST00000454392 318 ntBASIC19.28■□□□□ 0.68
LDB1Q86U70 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.28■□□□□ 0.68
LDB1Q86U70 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.28■□□□□ 0.68
LDB1Q86U70 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.28■□□□□ 0.68
LDB1Q86U70 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.28■□□□□ 0.68
LDB1Q86U70 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
LDB1Q86U70 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.28■□□□□ 0.68
LDB1Q86U70 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.28■□□□□ 0.68
LDB1Q86U70 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.28■□□□□ 0.68
LDB1Q86U70 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LDB1Q86U70 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
LDB1Q86U70 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.28■□□□□ 0.68
LDB1Q86U70 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.28■□□□□ 0.68
LDB1Q86U70 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LDB1Q86U70 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
LDB1Q86U70 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LDB1Q86U70 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.28■□□□□ 0.68
LDB1Q86U70 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LDB1Q86U70 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.27■□□□□ 0.68
LDB1Q86U70 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LDB1Q86U70 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
LDB1Q86U70 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
LDB1Q86U70 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LDB1Q86U70 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
LDB1Q86U70 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
LDB1Q86U70 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
LDB1Q86U70 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LDB1Q86U70 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
LDB1Q86U70 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LDB1Q86U70 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LDB1Q86U70 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LDB1Q86U70 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LDB1Q86U70 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.27■□□□□ 0.68
LDB1Q86U70 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms