Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 MIR4785-201ENST00000585005 73 ntBASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 AC026471.5-201ENST00000615068 467 ntBASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFWD3Q6PCD5 AC116562.4-201ENST00000641316 2276 ntBASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 KRT17P2-201ENST00000300992 1314 ntBASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
RFWD3Q6PCD5 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 KSR1P1-201ENST00000446298 240 ntBASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 AP003071.4-201ENST00000562276 1284 ntBASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RFWD3Q6PCD5 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
RFWD3Q6PCD5 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RFWD3Q6PCD5 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RFWD3Q6PCD5 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RFWD3Q6PCD5 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RFWD3Q6PCD5 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RFWD3Q6PCD5 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RFWD3Q6PCD5 AL355355.2-201ENST00000442321 338 ntBASIC20.14■□□□□ 0.81
RFWD3Q6PCD5 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.14■□□□□ 0.81
RFWD3Q6PCD5 AL355075.4-201ENST00000554988 638 ntBASIC20.14■□□□□ 0.81
RFWD3Q6PCD5 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RFWD3Q6PCD5 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.14■□□□□ 0.81
RFWD3Q6PCD5 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RFWD3Q6PCD5 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RFWD3Q6PCD5 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
RFWD3Q6PCD5 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RFWD3Q6PCD5 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.14■□□□□ 0.81
RFWD3Q6PCD5 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RFWD3Q6PCD5 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.14■□□□□ 0.81
RFWD3Q6PCD5 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RFWD3Q6PCD5 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
RFWD3Q6PCD5 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFWD3Q6PCD5 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
RFWD3Q6PCD5 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFWD3Q6PCD5 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
RFWD3Q6PCD5 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.13■□□□□ 0.81
RFWD3Q6PCD5 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RFWD3Q6PCD5 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFWD3Q6PCD5 KRT16P1-201ENST00000399124 1418 ntBASIC20.13■□□□□ 0.81
RFWD3Q6PCD5 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFWD3Q6PCD5 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RFWD3Q6PCD5 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms