Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NKX2-1P43699 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC15.84■□□□□ 0.13
NKX2-1P43699 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NKX2-1P43699 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
NKX2-1P43699 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
NKX2-1P43699 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NKX2-1P43699 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC15.84■□□□□ 0.13
NKX2-1P43699 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
NKX2-1P43699 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC15.84■□□□□ 0.13
NKX2-1P43699 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC15.84■□□□□ 0.13
NKX2-1P43699 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC15.84■□□□□ 0.13
NKX2-1P43699 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
NKX2-1P43699 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
NKX2-1P43699 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC15.84■□□□□ 0.13
NKX2-1P43699 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NKX2-1P43699 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NKX2-1P43699 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
NKX2-1P43699 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC15.83■□□□□ 0.13
NKX2-1P43699 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
NKX2-1P43699 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC15.83■□□□□ 0.13
NKX2-1P43699 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NKX2-1P43699 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC15.83■□□□□ 0.12
NKX2-1P43699 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX2-1P43699 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX2-1P43699 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.12
NKX2-1P43699 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC15.83■□□□□ 0.12
NKX2-1P43699 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX2-1P43699 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX2-1P43699 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NKX2-1P43699 AC027612.3-201ENST00000413684 1047 ntBASIC15.83■□□□□ 0.12
NKX2-1P43699 STOX2-205ENST00000513034 807 ntTSL 3 BASIC15.83■□□□□ 0.12
NKX2-1P43699 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC15.83■□□□□ 0.12
NKX2-1P43699 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC15.83■□□□□ 0.12
NKX2-1P43699 TERF1P2-201ENST00000583350 1212 ntBASIC15.83■□□□□ 0.12
NKX2-1P43699 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NKX2-1P43699 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
NKX2-1P43699 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX2-1P43699 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC15.83■□□□□ 0.12
NKX2-1P43699 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC15.83■□□□□ 0.12
NKX2-1P43699 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX2-1P43699 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX2-1P43699 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX2-1P43699 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX2-1P43699 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
NKX2-1P43699 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX2-1P43699 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC15.83■□□□□ 0.12
NKX2-1P43699 TEX21P-204ENST00000641479 1693 ntBASIC15.83■□□□□ 0.12
NKX2-1P43699 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX2-1P43699 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX2-1P43699 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX2-1P43699 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC15.82■□□□□ 0.12
NKX2-1P43699 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC15.82■□□□□ 0.12
NKX2-1P43699 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX2-1P43699 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX2-1P43699 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC15.82■□□□□ 0.12
NKX2-1P43699 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX2-1P43699 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX2-1P43699 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC15.82■□□□□ 0.12
NKX2-1P43699 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX2-1P43699 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC15.82■□□□□ 0.12
NKX2-1P43699 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX2-1P43699 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX2-1P43699 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC15.82■□□□□ 0.12
NKX2-1P43699 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX2-1P43699 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX2-1P43699 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
NKX2-1P43699 Z98044.1-201ENST00000632503 1764 ntBASIC15.82■□□□□ 0.12
NKX2-1P43699 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
NKX2-1P43699 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX2-1P43699 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX2-1P43699 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX2-1P43699 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX2-1P43699 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC15.82■□□□□ 0.12
NKX2-1P43699 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC15.82■□□□□ 0.12
NKX2-1P43699 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX2-1P43699 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
NKX2-1P43699 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX2-1P43699 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX2-1P43699 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
NKX2-1P43699 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
NKX2-1P43699 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
NKX2-1P43699 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX2-1P43699 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX2-1P43699 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
NKX2-1P43699 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
NKX2-1P43699 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC15.81■□□□□ 0.12
NKX2-1P43699 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
NKX2-1P43699 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
NKX2-1P43699 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC15.81■□□□□ 0.12
NKX2-1P43699 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC15.81■□□□□ 0.12
NKX2-1P43699 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
NKX2-1P43699 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC15.81■□□□□ 0.12
NKX2-1P43699 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX2-1P43699 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
NKX2-1P43699 AL031598.1-201ENST00000561511 1773 ntBASIC15.81■□□□□ 0.12
NKX2-1P43699 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX2-1P43699 AL591742.1-201ENST00000604433 565 ntBASIC15.81■□□□□ 0.12
NKX2-1P43699 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX2-1P43699 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX2-1P43699 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms