Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.38■□□□□ 0.69
PTPN4P29074 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN4P29074 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN4P29074 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.38■□□□□ 0.69
PTPN4P29074 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.38■□□□□ 0.69
PTPN4P29074 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.38■□□□□ 0.69
PTPN4P29074 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.38■□□□□ 0.69
PTPN4P29074 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN4P29074 AC073648.6-201ENST00000641589 218 ntBASIC19.38■□□□□ 0.69
PTPN4P29074 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN4P29074 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.37■□□□□ 0.69
PTPN4P29074 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN4P29074 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN4P29074 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN4P29074 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.37■□□□□ 0.69
PTPN4P29074 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN4P29074 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
PTPN4P29074 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.37■□□□□ 0.69
PTPN4P29074 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.37■□□□□ 0.69
PTPN4P29074 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.37■□□□□ 0.69
PTPN4P29074 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.37■□□□□ 0.69
PTPN4P29074 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN4P29074 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.37■□□□□ 0.69
PTPN4P29074 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
PTPN4P29074 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.37■□□□□ 0.69
PTPN4P29074 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN4P29074 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN4P29074 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.37■□□□□ 0.69
PTPN4P29074 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN4P29074 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.37■□□□□ 0.69
PTPN4P29074 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.37■□□□□ 0.69
PTPN4P29074 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.37■□□□□ 0.69
PTPN4P29074 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.37■□□□□ 0.69
PTPN4P29074 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
PTPN4P29074 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN4P29074 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.37■□□□□ 0.69
PTPN4P29074 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN4P29074 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN4P29074 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN4P29074 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN4P29074 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN4P29074 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN4P29074 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN4P29074 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
PTPN4P29074 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.36■□□□□ 0.69
PTPN4P29074 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN4P29074 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN4P29074 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN4P29074 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.36■□□□□ 0.69
PTPN4P29074 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN4P29074 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.36■□□□□ 0.69
PTPN4P29074 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.36■□□□□ 0.69
PTPN4P29074 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.36■□□□□ 0.69
PTPN4P29074 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN4P29074 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
PTPN4P29074 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.36■□□□□ 0.69
PTPN4P29074 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
PTPN4P29074 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.36■□□□□ 0.69
PTPN4P29074 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.36■□□□□ 0.69
PTPN4P29074 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN4P29074 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTPN4P29074 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.35■□□□□ 0.69
PTPN4P29074 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
PTPN4P29074 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
PTPN4P29074 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.35■□□□□ 0.69
PTPN4P29074 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.35■□□□□ 0.69
PTPN4P29074 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.35■□□□□ 0.69
PTPN4P29074 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.35■□□□□ 0.69
PTPN4P29074 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.35■□□□□ 0.69
PTPN4P29074 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
PTPN4P29074 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
PTPN4P29074 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTPN4P29074 CYP21A1P-202ENST00000354927 1481 ntBASIC19.35■□□□□ 0.69
PTPN4P29074 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.34■□□□□ 0.69
PTPN4P29074 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTPN4P29074 AC116050.2-201ENST00000612102 1779 ntBASIC19.34■□□□□ 0.69
PTPN4P29074 LTB4R2-202ENST00000528054 3092 ntBASIC19.34■□□□□ 0.69
PTPN4P29074 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTPN4P29074 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
PTPN4P29074 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
PTPN4P29074 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms