Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC27.33■■□□□ 1.97
NPHP4O75161 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC27.33■■□□□ 1.97
NPHP4O75161 SPEG-225ENST00000617028 815 ntTSL 5 BASIC27.33■■□□□ 1.97
NPHP4O75161 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC27.33■■□□□ 1.97
NPHP4O75161 CASK-201ENST00000378154 2494 ntTSL 5 BASIC27.33■■□□□ 1.97
NPHP4O75161 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC27.33■■□□□ 1.97
NPHP4O75161 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC27.33■■□□□ 1.97
NPHP4O75161 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.96
NPHP4O75161 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC27.33■■□□□ 1.96
NPHP4O75161 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC27.33■■□□□ 1.96
NPHP4O75161 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC27.33■■□□□ 1.96
NPHP4O75161 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC27.33■■□□□ 1.96
NPHP4O75161 HLA-F-220ENST00000434407 884 ntBASIC27.33■■□□□ 1.96
NPHP4O75161 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC27.33■■□□□ 1.96
NPHP4O75161 LINC01711-201ENST00000598340 967 ntBASIC27.33■■□□□ 1.96
NPHP4O75161 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC27.32■■□□□ 1.96
NPHP4O75161 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
NPHP4O75161 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC27.32■■□□□ 1.96
NPHP4O75161 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
NPHP4O75161 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
NPHP4O75161 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
NPHP4O75161 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC27.32■■□□□ 1.96
NPHP4O75161 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
NPHP4O75161 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
NPHP4O75161 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
NPHP4O75161 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC27.32■■□□□ 1.96
NPHP4O75161 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
NPHP4O75161 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC27.31■■□□□ 1.96
NPHP4O75161 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
NPHP4O75161 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
NPHP4O75161 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
NPHP4O75161 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
NPHP4O75161 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
NPHP4O75161 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
NPHP4O75161 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
NPHP4O75161 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC27.31■■□□□ 1.96
NPHP4O75161 AL590627.1-203ENST00000421194 1026 ntBASIC27.31■■□□□ 1.96
NPHP4O75161 TSPY22P-201ENST00000427496 604 ntBASIC27.31■■□□□ 1.96
NPHP4O75161 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC27.31■■□□□ 1.96
NPHP4O75161 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC27.31■■□□□ 1.96
NPHP4O75161 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC27.31■■□□□ 1.96
NPHP4O75161 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC27.31■■□□□ 1.96
NPHP4O75161 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC27.31■■□□□ 1.96
NPHP4O75161 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
NPHP4O75161 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
NPHP4O75161 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
NPHP4O75161 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
NPHP4O75161 MIR574-201ENST00000385209 96 ntBASIC27.3■■□□□ 1.96
NPHP4O75161 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC27.3■■□□□ 1.96
NPHP4O75161 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC27.3■■□□□ 1.96
NPHP4O75161 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC27.3■■□□□ 1.96
NPHP4O75161 AC092183.1-201ENST00000469884 875 ntBASIC27.3■■□□□ 1.96
NPHP4O75161 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC27.3■■□□□ 1.96
NPHP4O75161 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC27.3■■□□□ 1.96
NPHP4O75161 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC27.3■■□□□ 1.96
NPHP4O75161 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC27.3■■□□□ 1.96
NPHP4O75161 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
NPHP4O75161 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC27.29■■□□□ 1.96
NPHP4O75161 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
NPHP4O75161 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC27.29■■□□□ 1.96
NPHP4O75161 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC27.29■■□□□ 1.96
NPHP4O75161 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC27.29■■□□□ 1.96
NPHP4O75161 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC27.29■■□□□ 1.96
NPHP4O75161 AC024243.1-201ENST00000609234 778 ntBASIC27.29■■□□□ 1.96
NPHP4O75161 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
NPHP4O75161 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC27.28■■□□□ 1.96
NPHP4O75161 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
NPHP4O75161 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
NPHP4O75161 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC27.28■■□□□ 1.96
NPHP4O75161 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC27.28■■□□□ 1.96
NPHP4O75161 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
NPHP4O75161 AKR1C7P-201ENST00000305623 895 ntBASIC27.28■■□□□ 1.96
NPHP4O75161 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
NPHP4O75161 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC27.28■■□□□ 1.96
NPHP4O75161 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC27.28■■□□□ 1.96
NPHP4O75161 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
NPHP4O75161 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
NPHP4O75161 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC27.28■■□□□ 1.96
NPHP4O75161 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
NPHP4O75161 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC27.27■■□□□ 1.96
NPHP4O75161 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC27.27■■□□□ 1.96
NPHP4O75161 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
NPHP4O75161 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
NPHP4O75161 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC27.27■■□□□ 1.96
NPHP4O75161 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
NPHP4O75161 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
NPHP4O75161 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC27.27■■□□□ 1.96
NPHP4O75161 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC27.27■■□□□ 1.96
NPHP4O75161 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
NPHP4O75161 AF228730.7-201ENST00000641842 219 ntBASIC27.27■■□□□ 1.96
NPHP4O75161 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
NPHP4O75161 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
NPHP4O75161 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
NPHP4O75161 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
NPHP4O75161 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
NPHP4O75161 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
NPHP4O75161 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
NPHP4O75161 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
NPHP4O75161 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
NPHP4O75161 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC27.26■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms