Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SDCBPO00560 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
SDCBPO00560 ADK-206ENST00000541550 2222 ntTSL 2 BASIC16.45■□□□□ 0.22
SDCBPO00560 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC16.45■□□□□ 0.22
SDCBPO00560 BX276092.2-201ENST00000417668 665 ntBASIC16.45■□□□□ 0.22
SDCBPO00560 SERPINH1P1-201ENST00000419794 1249 ntBASIC16.45■□□□□ 0.22
SDCBPO00560 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
SDCBPO00560 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDCBPO00560 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC16.45■□□□□ 0.22
SDCBPO00560 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SDCBPO00560 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC16.45■□□□□ 0.22
SDCBPO00560 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDCBPO00560 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDCBPO00560 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDCBPO00560 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDCBPO00560 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.45■□□□□ 0.22
SDCBPO00560 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDCBPO00560 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.45■□□□□ 0.22
SDCBPO00560 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC16.45■□□□□ 0.22
SDCBPO00560 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDCBPO00560 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDCBPO00560 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SDCBPO00560 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
SDCBPO00560 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDCBPO00560 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SDCBPO00560 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SDCBPO00560 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDCBPO00560 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
SDCBPO00560 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDCBPO00560 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SDCBPO00560 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDCBPO00560 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC16.44■□□□□ 0.22
SDCBPO00560 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SDCBPO00560 CROCCP5-201ENST00000436658 830 ntBASIC16.44■□□□□ 0.22
SDCBPO00560 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC16.44■□□□□ 0.22
SDCBPO00560 RAP2CP1-201ENST00000605103 478 ntBASIC16.44■□□□□ 0.22
SDCBPO00560 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDCBPO00560 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDCBPO00560 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SDCBPO00560 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.44■□□□□ 0.22
SDCBPO00560 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDCBPO00560 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SDCBPO00560 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SDCBPO00560 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SDCBPO00560 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDCBPO00560 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDCBPO00560 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SDCBPO00560 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDCBPO00560 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC16.43■□□□□ 0.22
SDCBPO00560 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDCBPO00560 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDCBPO00560 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDCBPO00560 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SDCBPO00560 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC16.43■□□□□ 0.22
SDCBPO00560 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC16.43■□□□□ 0.22
SDCBPO00560 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC16.43■□□□□ 0.22
SDCBPO00560 PHGDH-210ENST00000641115 1638 ntBASIC16.43■□□□□ 0.22
SDCBPO00560 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDCBPO00560 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDCBPO00560 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDCBPO00560 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDCBPO00560 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.43■□□□□ 0.22
SDCBPO00560 AC104581.1-202ENST00000635932 2618 ntBASIC16.43■□□□□ 0.22
SDCBPO00560 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDCBPO00560 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDCBPO00560 CROCCP3-202ENST00000420820 1947 ntBASIC16.43■□□□□ 0.22
SDCBPO00560 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
SDCBPO00560 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SDCBPO00560 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SDCBPO00560 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
SDCBPO00560 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SDCBPO00560 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC16.42■□□□□ 0.22
SDCBPO00560 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SDCBPO00560 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SDCBPO00560 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SDCBPO00560 OAS3-207ENST00000551007 998 ntTSL 2 BASIC16.42■□□□□ 0.22
SDCBPO00560 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC16.42■□□□□ 0.22
SDCBPO00560 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
SDCBPO00560 AL121832.2-201ENST00000610979 668 ntBASIC16.42■□□□□ 0.22
SDCBPO00560 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SDCBPO00560 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC16.42■□□□□ 0.22
SDCBPO00560 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SDCBPO00560 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC16.42■□□□□ 0.22
SDCBPO00560 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SDCBPO00560 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC16.42■□□□□ 0.22
SDCBPO00560 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SDCBPO00560 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC16.42■□□□□ 0.22
SDCBPO00560 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
SDCBPO00560 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC16.42■□□□□ 0.22
SDCBPO00560 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC16.42■□□□□ 0.22
SDCBPO00560 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SDCBPO00560 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDCBPO00560 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDCBPO00560 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDCBPO00560 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDCBPO00560 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SDCBPO00560 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDCBPO00560 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDCBPO00560 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.41■□□□□ 0.22
SDCBPO00560 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms