Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGN4O00479 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGN4O00479 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
HMGN4O00479 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGN4O00479 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGN4O00479 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
HMGN4O00479 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18■□□□□ 0.47
HMGN4O00479 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18■□□□□ 0.47
HMGN4O00479 HLA-L-209ENST00000420110 1011 ntBASIC18■□□□□ 0.47
HMGN4O00479 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
HMGN4O00479 UNC93B5-201ENST00000530315 699 ntBASIC18■□□□□ 0.47
HMGN4O00479 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
HMGN4O00479 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGN4O00479 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18■□□□□ 0.47
HMGN4O00479 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
HMGN4O00479 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18■□□□□ 0.47
HMGN4O00479 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGN4O00479 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
HMGN4O00479 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGN4O00479 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGN4O00479 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGN4O00479 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGN4O00479 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGN4O00479 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
HMGN4O00479 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGN4O00479 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGN4O00479 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
HMGN4O00479 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGN4O00479 POM121L13P-201ENST00000422362 380 ntBASIC17.99■□□□□ 0.47
HMGN4O00479 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC17.99■□□□□ 0.47
HMGN4O00479 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC17.99■□□□□ 0.47
HMGN4O00479 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGN4O00479 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGN4O00479 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC17.99■□□□□ 0.47
HMGN4O00479 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.99■□□□□ 0.47
HMGN4O00479 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGN4O00479 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGN4O00479 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGN4O00479 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
HMGN4O00479 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGN4O00479 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGN4O00479 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGN4O00479 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGN4O00479 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGN4O00479 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGN4O00479 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGN4O00479 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
HMGN4O00479 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGN4O00479 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.99■□□□□ 0.47
HMGN4O00479 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGN4O00479 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGN4O00479 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HMGN4O00479 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGN4O00479 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGN4O00479 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGN4O00479 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGN4O00479 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGN4O00479 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
HMGN4O00479 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGN4O00479 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGN4O00479 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGN4O00479 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.98■□□□□ 0.47
HMGN4O00479 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.98■□□□□ 0.47
HMGN4O00479 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGN4O00479 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGN4O00479 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGN4O00479 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGN4O00479 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.98■□□□□ 0.47
HMGN4O00479 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGN4O00479 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGN4O00479 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGN4O00479 CROCCP3-202ENST00000420820 1947 ntBASIC17.98■□□□□ 0.47
HMGN4O00479 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
HMGN4O00479 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGN4O00479 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.98■□□□□ 0.47
HMGN4O00479 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGN4O00479 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.98■□□□□ 0.47
HMGN4O00479 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.98■□□□□ 0.47
HMGN4O00479 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGN4O00479 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGN4O00479 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.97■□□□□ 0.47
HMGN4O00479 AC006333.2-201ENST00000607957 2099 ntBASIC17.97■□□□□ 0.47
HMGN4O00479 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGN4O00479 AC120498.9-201ENST00000339021 3867 ntBASIC17.97■□□□□ 0.47
HMGN4O00479 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGN4O00479 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGN4O00479 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
HMGN4O00479 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
HMGN4O00479 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGN4O00479 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGN4O00479 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGN4O00479 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGN4O00479 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGN4O00479 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC17.97■□□□□ 0.47
HMGN4O00479 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGN4O00479 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGN4O00479 AC008403.3-201ENST00000598924 454 ntBASIC17.97■□□□□ 0.47
HMGN4O00479 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.97■□□□□ 0.47
HMGN4O00479 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGN4O00479 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms