Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC007991.1-201ENST00000522680 631 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC7.28□□□□□ -1.24
COL9A1P20849 MIR3176-201ENST00000582210 90 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC7.28□□□□□ -1.24
COL9A1P20849 AC145423.1-201ENST00000605712 336 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 HMGN2P28-201ENST00000606102 262 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 EFCAB8-204ENST00000618684 435 ntTSL 5 BASIC7.28□□□□□ -1.24
COL9A1P20849 AC127024.6-201ENST00000621598 424 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 OTX2-201ENST00000339475 3001 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL9A1P20849 LINC01537-201ENST00000450804 2450 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL9A1P20849 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL9A1P20849 CDK19-201ENST00000323817 6067 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL9A1P20849 ZNF888-202ENST00000638862 4195 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
COL9A1P20849 A1CF-201ENST00000282641 9350 ntAPPRIS ALT1 TSL 2 BASIC7.28□□□□□ -1.24
COL9A1P20849 AC138627.1-203ENST00000641872 1680 ntBASIC7.28□□□□□ -1.24
COL9A1P20849 EFHC1-233ENST00000637353 3829 ntTSL 5 BASIC7.28□□□□□ -1.24
COL9A1P20849 PIAS1-201ENST00000249636 8115 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL9A1P20849 ZNF793-208ENST00000588578 4549 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL9A1P20849 SLC24A1-209ENST00000537259 3983 ntAPPRIS ALT2 TSL 2 BASIC7.27□□□□□ -1.24
COL9A1P20849 THAP12P7-201ENST00000520248 2290 ntBASIC7.27□□□□□ -1.24
COL9A1P20849 PIK3R3-202ENST00000372006 5019 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.24
COL9A1P20849 PTPRT-211ENST00000618610 3230 ntTSL 5 BASIC7.27□□□□□ -1.24
COL9A1P20849 RAI14-205ENST00000503673 3339 ntAPPRIS P1 TSL 2 BASIC7.27□□□□□ -1.24
COL9A1P20849 RABEP1-201ENST00000341923 2490 ntTSL 1 (best) BASIC7.27□□□□□ -1.24
COL9A1P20849 SHQ1P1-201ENST00000437111 1544 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 NTRK3-212ENST00000558676 4670 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
COL9A1P20849 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC7.27□□□□□ -1.25
COL9A1P20849 NPIPB5-205ENST00000424340 3801 ntAPPRIS P2 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL9A1P20849 AP000766.1-201ENST00000561746 4140 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 ACKR2-201ENST00000422265 2956 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL9A1P20849 HNRNPU-223ENST00000640001 4227 ntTSL 5 BASIC7.27□□□□□ -1.25
COL9A1P20849 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC7.27□□□□□ -1.25
COL9A1P20849 IQGAP1-201ENST00000268182 7233 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL9A1P20849 EIF4E2-207ENST00000409514 3525 ntTSL 5 BASIC7.27□□□□□ -1.25
COL9A1P20849 DEFB119-201ENST00000339144 484 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL9A1P20849 Y_RNA.19-201ENST00000362462 99 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 RNA5SP472-201ENST00000363868 119 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 RNA5SP242-201ENST00000364171 118 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 Y_RNA.274-201ENST00000364714 101 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 Y_RNA.314-201ENST00000365114 102 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 AC016769.3-201ENST00000396562 315 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 RPL21P24-201ENST00000413752 448 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC7.27□□□□□ -1.25
COL9A1P20849 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC7.27□□□□□ -1.25
COL9A1P20849 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC7.27□□□□□ -1.25
COL9A1P20849 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC7.27□□□□□ -1.25
COL9A1P20849 PTMAP1-205ENST00000455552 325 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC7.27□□□□□ -1.25
COL9A1P20849 AKR1D1P1-201ENST00000457236 936 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 snoU13.8-201ENST00000458890 104 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 SCARNA18-201ENST00000459004 134 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC7.27□□□□□ -1.25
COL9A1P20849 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC7.27□□□□□ -1.25
COL9A1P20849 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC7.27□□□□□ -1.25
COL9A1P20849 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC7.27□□□□□ -1.25
COL9A1P20849 AP001858.2-201ENST00000536213 601 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 AC091516.1-201ENST00000549191 703 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC7.27□□□□□ -1.25
COL9A1P20849 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC7.27□□□□□ -1.25
COL9A1P20849 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC7.27□□□□□ -1.25
COL9A1P20849 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC7.27□□□□□ -1.25
COL9A1P20849 MIR5188-201ENST00000583467 113 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 AC020916.2-201ENST00000591242 360 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC7.27□□□□□ -1.25
COL9A1P20849 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC7.27□□□□□ -1.25
COL9A1P20849 AL356274.1-201ENST00000617064 410 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 AL049767.1-202ENST00000637826 242 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 DAZ1-202ENST00000405239 4421 ntAPPRIS P5 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL9A1P20849 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL9A1P20849 AC090220.1-201ENST00000593078 1699 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL9A1P20849 LGI1-211ENST00000630047 1751 ntTSL 2 BASIC7.27□□□□□ -1.25
COL9A1P20849 PPFIA2-220ENST00000550584 5405 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
COL9A1P20849 R3HDM2P1-201ENST00000505381 1960 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 NXPH1-205ENST00000602349 1953 ntBASIC7.27□□□□□ -1.25
COL9A1P20849 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC7.27□□□□□ -1.25
COL9A1P20849 VCAM1-204ENST00000370119 2483 ntTSL 2 BASIC7.27□□□□□ -1.25
COL9A1P20849 PDZK1P1-201ENST00000401008 3498 ntTSL 2 BASIC7.27□□□□□ -1.25
COL9A1P20849 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL9A1P20849 EIF4E3-204ENST00000425534 9949 ntAPPRIS P1 TSL 2 BASIC7.27□□□□□ -1.25
COL9A1P20849 NCKAP1L-201ENST00000293373 9016 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL9A1P20849 FKBP15-201ENST00000238256 4336 ntAPPRIS P2 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL9A1P20849 KALRN-202ENST00000291478 10888 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
COL9A1P20849 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
COL9A1P20849 ARHGAP24-202ENST00000395183 2740 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
COL9A1P20849 CAP1-206ENST00000372805 2217 ntAPPRIS P3 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL9A1P20849 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
COL9A1P20849 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
COL9A1P20849 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
COL9A1P20849 PHIP-201ENST00000275034 10460 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL9A1P20849 SHPRH-203ENST00000367505 7201 ntAPPRIS P2 TSL 5 BASIC7.26□□□□□ -1.25
COL9A1P20849 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC7.26□□□□□ -1.25
COL9A1P20849 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC7.26□□□□□ -1.25
COL9A1P20849 LINC01204-203ENST00000609127 2900 ntTSL 2 BASIC7.26□□□□□ -1.25
COL9A1P20849 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC7.26□□□□□ -1.25
COL9A1P20849 BPTF-203ENST00000335221 2627 ntTSL 5 BASIC7.26□□□□□ -1.25
COL9A1P20849 MCM8-202ENST00000378883 3574 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
COL9A1P20849 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL9A1P20849 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
COL9A1P20849 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC7.26□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms