Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 BICD1-207ENST00000551848 1962 ntBASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 AP000997.3-201ENST00000623333 2250 ntBASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 NOC2LP1-202ENST00000452600 2235 ntBASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USH1CQ9Y6N9 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USH1CQ9Y6N9 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USH1CQ9Y6N9 AC004854.2-201ENST00000608450 1441 ntBASIC19.27■□□□□ 0.68
USH1CQ9Y6N9 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
USH1CQ9Y6N9 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USH1CQ9Y6N9 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USH1CQ9Y6N9 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USH1CQ9Y6N9 AL354751.1-201ENST00000412768 1863 ntBASIC19.27■□□□□ 0.68
USH1CQ9Y6N9 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USH1CQ9Y6N9 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.27■□□□□ 0.68
USH1CQ9Y6N9 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
USH1CQ9Y6N9 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USH1CQ9Y6N9 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.27■□□□□ 0.68
USH1CQ9Y6N9 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.27■□□□□ 0.68
USH1CQ9Y6N9 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.27■□□□□ 0.68
USH1CQ9Y6N9 AL031963.3-201ENST00000606441 850 ntBASIC19.27■□□□□ 0.68
USH1CQ9Y6N9 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USH1CQ9Y6N9 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.27■□□□□ 0.68
USH1CQ9Y6N9 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
USH1CQ9Y6N9 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
USH1CQ9Y6N9 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USH1CQ9Y6N9 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.27■□□□□ 0.67
USH1CQ9Y6N9 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
USH1CQ9Y6N9 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
USH1CQ9Y6N9 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.27■□□□□ 0.67
USH1CQ9Y6N9 AL031598.1-201ENST00000561511 1773 ntBASIC19.27■□□□□ 0.67
USH1CQ9Y6N9 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.27■□□□□ 0.67
USH1CQ9Y6N9 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USH1CQ9Y6N9 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
USH1CQ9Y6N9 AC142381.2-201ENST00000566120 298 ntBASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms