Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMA1Q9UHB6 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.18■□□□□ 0.98
LIMA1Q9UHB6 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.18■□□□□ 0.98
LIMA1Q9UHB6 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMA1Q9UHB6 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMA1Q9UHB6 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMA1Q9UHB6 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMA1Q9UHB6 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC21.18■□□□□ 0.98
LIMA1Q9UHB6 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMA1Q9UHB6 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
LIMA1Q9UHB6 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMA1Q9UHB6 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMA1Q9UHB6 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMA1Q9UHB6 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMA1Q9UHB6 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC21.18■□□□□ 0.98
LIMA1Q9UHB6 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMA1Q9UHB6 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 GUSBP6-202ENST00000438529 1198 ntBASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 AL137784.2-201ENST00000607332 1000 ntBASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMA1Q9UHB6 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 IRX1P1-201ENST00000438849 1838 ntBASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 AL121906.2-201ENST00000621597 723 ntBASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LIMA1Q9UHB6 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 MYC-209ENST00000641252 345 ntBASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LIMA1Q9UHB6 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.14■□□□□ 0.98
LIMA1Q9UHB6 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LIMA1Q9UHB6 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
LIMA1Q9UHB6 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LIMA1Q9UHB6 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LIMA1Q9UHB6 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LIMA1Q9UHB6 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LIMA1Q9UHB6 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC21.14■□□□□ 0.98
LIMA1Q9UHB6 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC21.14■□□□□ 0.98
LIMA1Q9UHB6 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC21.14■□□□□ 0.98
LIMA1Q9UHB6 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.14■□□□□ 0.97
LIMA1Q9UHB6 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms