Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.83■□□□□ 0.93
SIX2Q9NPC8 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SIX2Q9NPC8 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SIX2Q9NPC8 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SIX2Q9NPC8 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.92
SIX2Q9NPC8 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SIX2Q9NPC8 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.83■□□□□ 0.92
SIX2Q9NPC8 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SIX2Q9NPC8 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SIX2Q9NPC8 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SIX2Q9NPC8 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
SIX2Q9NPC8 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.83■□□□□ 0.92
SIX2Q9NPC8 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SIX2Q9NPC8 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 NBPF21P-201ENST00000425093 1451 ntBASIC20.82■□□□□ 0.92
SIX2Q9NPC8 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SIX2Q9NPC8 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 FP475955.4-201ENST00000623131 1990 ntBASIC20.81■□□□□ 0.92
SIX2Q9NPC8 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
SIX2Q9NPC8 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 C1QL1P1-201ENST00000568105 661 ntBASIC20.8■□□□□ 0.92
SIX2Q9NPC8 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
SIX2Q9NPC8 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 KRT17P3-201ENST00000420566 1262 ntBASIC20.79■□□□□ 0.92
SIX2Q9NPC8 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.79■□□□□ 0.92
SIX2Q9NPC8 PRKY-204ENST00000533551 1019 ntBASIC20.79■□□□□ 0.92
SIX2Q9NPC8 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms