Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TM9SF3Q9HD45 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
TM9SF3Q9HD45 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
TM9SF3Q9HD45 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.38■□□□□ 0.69
TM9SF3Q9HD45 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.38■□□□□ 0.69
TM9SF3Q9HD45 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.38■□□□□ 0.69
TM9SF3Q9HD45 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TM9SF3Q9HD45 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.38■□□□□ 0.69
TM9SF3Q9HD45 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.38■□□□□ 0.69
TM9SF3Q9HD45 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TM9SF3Q9HD45 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.38■□□□□ 0.69
TM9SF3Q9HD45 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
TM9SF3Q9HD45 AC130371.2-201ENST00000619443 611 ntBASIC19.38■□□□□ 0.69
TM9SF3Q9HD45 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TM9SF3Q9HD45 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
TM9SF3Q9HD45 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.38■□□□□ 0.69
TM9SF3Q9HD45 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 RCC2P6-201ENST00000526625 1557 ntBASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 AC128688.1-201ENST00000487626 519 ntBASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 AP000692.2-201ENST00000608391 879 ntBASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 AC011298.2-201ENST00000617989 482 ntBASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 AC006011.2-201ENST00000621313 1158 ntBASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 HLA-A-209ENST00000638375 975 ntBASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TM9SF3Q9HD45 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 AC020907.5-201ENST00000624372 1936 ntBASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 INGX-201ENST00000359239 846 ntBASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.36■□□□□ 0.69
TM9SF3Q9HD45 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TM9SF3Q9HD45 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms