Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC24.68■■□□□ 1.54
USP42Q9H9J4 AC005332.1-201ENST00000577698 1310 ntBASIC24.68■■□□□ 1.54
USP42Q9H9J4 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
USP42Q9H9J4 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC24.67■■□□□ 1.54
USP42Q9H9J4 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC24.67■■□□□ 1.54
USP42Q9H9J4 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
USP42Q9H9J4 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC24.67■■□□□ 1.54
USP42Q9H9J4 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
USP42Q9H9J4 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
USP42Q9H9J4 IPPK-202ENST00000375522 882 ntTSL 3 BASIC24.67■■□□□ 1.54
USP42Q9H9J4 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
USP42Q9H9J4 GLRB-205ENST00000512619 728 ntTSL 3 BASIC24.67■■□□□ 1.54
USP42Q9H9J4 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC24.67■■□□□ 1.54
USP42Q9H9J4 AL512604.3-201ENST00000569583 964 ntBASIC24.67■■□□□ 1.54
USP42Q9H9J4 AC093458.2-201ENST00000623150 629 ntBASIC24.67■■□□□ 1.54
USP42Q9H9J4 AC116407.4-201ENST00000623319 1061 ntBASIC24.67■■□□□ 1.54
USP42Q9H9J4 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
USP42Q9H9J4 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC24.67■■□□□ 1.54
USP42Q9H9J4 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
USP42Q9H9J4 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
USP42Q9H9J4 SMG8-203ENST00000578922 2178 ntBASIC24.67■■□□□ 1.54
USP42Q9H9J4 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
USP42Q9H9J4 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
USP42Q9H9J4 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
USP42Q9H9J4 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC24.67■■□□□ 1.54
USP42Q9H9J4 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC24.66■■□□□ 1.54
USP42Q9H9J4 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC24.66■■□□□ 1.54
USP42Q9H9J4 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
USP42Q9H9J4 CA15P1-201ENST00000481698 905 ntBASIC24.66■■□□□ 1.54
USP42Q9H9J4 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC24.66■■□□□ 1.54
USP42Q9H9J4 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC24.66■■□□□ 1.54
USP42Q9H9J4 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
USP42Q9H9J4 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC24.66■■□□□ 1.54
USP42Q9H9J4 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
USP42Q9H9J4 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC24.66■■□□□ 1.54
USP42Q9H9J4 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC24.66■■□□□ 1.54
USP42Q9H9J4 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC24.66■■□□□ 1.54
USP42Q9H9J4 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC24.66■■□□□ 1.54
USP42Q9H9J4 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
USP42Q9H9J4 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
USP42Q9H9J4 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
USP42Q9H9J4 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC24.65■■□□□ 1.54
USP42Q9H9J4 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
USP42Q9H9J4 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC24.65■■□□□ 1.54
USP42Q9H9J4 KRT18P38-201ENST00000449496 1282 ntBASIC24.65■■□□□ 1.54
USP42Q9H9J4 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
USP42Q9H9J4 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC24.65■■□□□ 1.54
USP42Q9H9J4 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
USP42Q9H9J4 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
USP42Q9H9J4 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
USP42Q9H9J4 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
USP42Q9H9J4 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC24.65■■□□□ 1.54
USP42Q9H9J4 KRT8P8-201ENST00000434750 1448 ntBASIC24.65■■□□□ 1.54
USP42Q9H9J4 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
USP42Q9H9J4 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
USP42Q9H9J4 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC24.64■■□□□ 1.54
USP42Q9H9J4 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC24.64■■□□□ 1.54
USP42Q9H9J4 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
USP42Q9H9J4 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC24.64■■□□□ 1.54
USP42Q9H9J4 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC24.64■■□□□ 1.54
USP42Q9H9J4 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC24.64■■□□□ 1.54
USP42Q9H9J4 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
USP42Q9H9J4 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
USP42Q9H9J4 AC099778.1-201ENST00000568593 1911 ntBASIC24.64■■□□□ 1.53
USP42Q9H9J4 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC24.64■■□□□ 1.53
USP42Q9H9J4 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC24.64■■□□□ 1.53
USP42Q9H9J4 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
USP42Q9H9J4 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
USP42Q9H9J4 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.53
USP42Q9H9J4 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
USP42Q9H9J4 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
USP42Q9H9J4 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
USP42Q9H9J4 AL450487.1-201ENST00000426799 995 ntBASIC24.63■■□□□ 1.53
USP42Q9H9J4 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
USP42Q9H9J4 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
USP42Q9H9J4 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
USP42Q9H9J4 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC24.63■■□□□ 1.53
USP42Q9H9J4 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC24.63■■□□□ 1.53
USP42Q9H9J4 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC24.63■■□□□ 1.53
USP42Q9H9J4 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
USP42Q9H9J4 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
USP42Q9H9J4 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
USP42Q9H9J4 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC24.63■■□□□ 1.53
USP42Q9H9J4 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC24.63■■□□□ 1.53
USP42Q9H9J4 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
USP42Q9H9J4 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC24.63■■□□□ 1.53
USP42Q9H9J4 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
USP42Q9H9J4 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
USP42Q9H9J4 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
USP42Q9H9J4 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
USP42Q9H9J4 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC24.63■■□□□ 1.53
USP42Q9H9J4 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC24.63■■□□□ 1.53
USP42Q9H9J4 USP39-204ENST00000409766 2033 ntTSL 2 BASIC24.63■■□□□ 1.53
USP42Q9H9J4 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC24.63■■□□□ 1.53
USP42Q9H9J4 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
USP42Q9H9J4 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC24.63■■□□□ 1.53
USP42Q9H9J4 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
USP42Q9H9J4 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
USP42Q9H9J4 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC24.62■■□□□ 1.53
USP42Q9H9J4 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC24.62■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms