Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.28■□□□□ 0.68
TRIM4Q9C037 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM4Q9C037 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM4Q9C037 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM4Q9C037 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC19.28■□□□□ 0.68
TRIM4Q9C037 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM4Q9C037 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM4Q9C037 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM4Q9C037 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
TRIM4Q9C037 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
TRIM4Q9C037 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM4Q9C037 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.27■□□□□ 0.68
TRIM4Q9C037 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM4Q9C037 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM4Q9C037 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM4Q9C037 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
TRIM4Q9C037 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM4Q9C037 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
TRIM4Q9C037 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM4Q9C037 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.27■□□□□ 0.68
TRIM4Q9C037 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM4Q9C037 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.27■□□□□ 0.68
TRIM4Q9C037 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19.27■□□□□ 0.68
TRIM4Q9C037 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.27■□□□□ 0.68
TRIM4Q9C037 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.27■□□□□ 0.68
TRIM4Q9C037 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.27■□□□□ 0.68
TRIM4Q9C037 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM4Q9C037 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
TRIM4Q9C037 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
TRIM4Q9C037 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM4Q9C037 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.27■□□□□ 0.68
TRIM4Q9C037 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.27■□□□□ 0.68
TRIM4Q9C037 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM4Q9C037 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM4Q9C037 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM4Q9C037 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.27■□□□□ 0.67
TRIM4Q9C037 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM4Q9C037 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
TRIM4Q9C037 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM4Q9C037 AC116050.2-201ENST00000612102 1779 ntBASIC19.27■□□□□ 0.67
TRIM4Q9C037 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM4Q9C037 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
TRIM4Q9C037 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM4Q9C037 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM4Q9C037 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM4Q9C037 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM4Q9C037 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM4Q9C037 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.26■□□□□ 0.67
TRIM4Q9C037 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM4Q9C037 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.26■□□□□ 0.67
TRIM4Q9C037 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM4Q9C037 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM4Q9C037 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM4Q9C037 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM4Q9C037 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
TRIM4Q9C037 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM4Q9C037 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM4Q9C037 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM4Q9C037 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
TRIM4Q9C037 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM4Q9C037 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM4Q9C037 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM4Q9C037 AC106820.2-201ENST00000563775 3264 ntBASIC19.25■□□□□ 0.67
TRIM4Q9C037 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
TRIM4Q9C037 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM4Q9C037 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
TRIM4Q9C037 AL032819.2-201ENST00000624543 2162 ntBASIC19.25■□□□□ 0.67
TRIM4Q9C037 BCL2-203ENST00000589955 5011 ntBASIC19.25■□□□□ 0.67
TRIM4Q9C037 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM4Q9C037 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM4Q9C037 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.25■□□□□ 0.67
TRIM4Q9C037 BX088651.1-201ENST00000540551 451 ntBASIC19.25■□□□□ 0.67
TRIM4Q9C037 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.25■□□□□ 0.67
TRIM4Q9C037 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM4Q9C037 MIR2861-201ENST00000636310 90 ntBASIC19.25■□□□□ 0.67
TRIM4Q9C037 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM4Q9C037 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM4Q9C037 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM4Q9C037 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
TRIM4Q9C037 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM4Q9C037 AC010980.2-201ENST00000587099 1412 ntBASIC19.25■□□□□ 0.67
TRIM4Q9C037 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.25■□□□□ 0.67
TRIM4Q9C037 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM4Q9C037 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM4Q9C037 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.24■□□□□ 0.67
TRIM4Q9C037 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM4Q9C037 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
TRIM4Q9C037 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM4Q9C037 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM4Q9C037 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
TRIM4Q9C037 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM4Q9C037 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM4Q9C037 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
TRIM4Q9C037 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
TRIM4Q9C037 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM4Q9C037 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM4Q9C037 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM4Q9C037 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM4Q9C037 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM4Q9C037 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms