Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS13AQ96RL7 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS13AQ96RL7 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.22■□□□□ 0.67
VPS13AQ96RL7 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS13AQ96RL7 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
VPS13AQ96RL7 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS13AQ96RL7 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.22■□□□□ 0.67
VPS13AQ96RL7 TSPY19P-201ENST00000418461 509 ntBASIC19.22■□□□□ 0.67
VPS13AQ96RL7 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS13AQ96RL7 TSPY18P-201ENST00000441642 509 ntBASIC19.22■□□□□ 0.67
VPS13AQ96RL7 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS13AQ96RL7 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
VPS13AQ96RL7 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS13AQ96RL7 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
VPS13AQ96RL7 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS13AQ96RL7 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS13AQ96RL7 SMG8-203ENST00000578922 2178 ntBASIC19.21■□□□□ 0.67
VPS13AQ96RL7 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
VPS13AQ96RL7 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS13AQ96RL7 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS13AQ96RL7 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.21■□□□□ 0.67
VPS13AQ96RL7 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS13AQ96RL7 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS13AQ96RL7 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
VPS13AQ96RL7 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS13AQ96RL7 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS13AQ96RL7 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
VPS13AQ96RL7 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS13AQ96RL7 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS13AQ96RL7 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS13AQ96RL7 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
VPS13AQ96RL7 FP700111.2-201ENST00000619190 1892 ntBASIC19.21■□□□□ 0.66
VPS13AQ96RL7 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 FAM220CP-201ENST00000395253 831 ntBASIC19.2■□□□□ 0.66
VPS13AQ96RL7 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 AL162741.1-201ENST00000565563 1558 ntBASIC19.2■□□□□ 0.66
VPS13AQ96RL7 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
VPS13AQ96RL7 AL121672.3-201ENST00000608644 468 ntBASIC19.2■□□□□ 0.66
VPS13AQ96RL7 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 CFL1-212ENST00000531413 636 ntTSL 3 BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 KRT8P17-201ENST00000453110 1448 ntBASIC19.19■□□□□ 0.66
VPS13AQ96RL7 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.19■□□□□ 0.66
VPS13AQ96RL7 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 AL590627.1-203ENST00000421194 1026 ntBASIC19.18■□□□□ 0.66
VPS13AQ96RL7 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS13AQ96RL7 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms