Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LINC00477Q96M19 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LINC00477Q96M19 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LINC00477Q96M19 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC14.52□□□□□ -0.09
LINC00477Q96M19 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LINC00477Q96M19 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LINC00477Q96M19 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
LINC00477Q96M19 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC14.52□□□□□ -0.09
LINC00477Q96M19 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
LINC00477Q96M19 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC14.52□□□□□ -0.09
LINC00477Q96M19 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC14.52□□□□□ -0.09
LINC00477Q96M19 MARS-234ENST00000630571 216 ntTSL 5 BASIC14.52□□□□□ -0.09
LINC00477Q96M19 MARS-235ENST00000630803 183 ntTSL 3 BASIC14.52□□□□□ -0.09
LINC00477Q96M19 AC073111.5-205ENST00000641717 521 ntBASIC14.52□□□□□ -0.09
LINC00477Q96M19 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC14.52□□□□□ -0.09
LINC00477Q96M19 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC14.52□□□□□ -0.09
LINC00477Q96M19 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
LINC00477Q96M19 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
LINC00477Q96M19 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LINC00477Q96M19 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LINC00477Q96M19 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
LINC00477Q96M19 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC14.51□□□□□ -0.09
LINC00477Q96M19 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00477Q96M19 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00477Q96M19 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00477Q96M19 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00477Q96M19 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00477Q96M19 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00477Q96M19 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC14.51□□□□□ -0.09
LINC00477Q96M19 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00477Q96M19 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC14.51□□□□□ -0.09
LINC00477Q96M19 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00477Q96M19 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00477Q96M19 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC14.51□□□□□ -0.09
LINC00477Q96M19 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00477Q96M19 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC14.51□□□□□ -0.09
LINC00477Q96M19 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC14.51□□□□□ -0.09
LINC00477Q96M19 HES2-206ENST00000489730 730 ntTSL 2 BASIC14.51□□□□□ -0.09
LINC00477Q96M19 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC14.51□□□□□ -0.09
LINC00477Q96M19 OAS3-207ENST00000551007 998 ntTSL 2 BASIC14.51□□□□□ -0.09
LINC00477Q96M19 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC14.51□□□□□ -0.09
LINC00477Q96M19 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00477Q96M19 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00477Q96M19 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC14.51□□□□□ -0.09
LINC00477Q96M19 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00477Q96M19 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00477Q96M19 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LINC00477Q96M19 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC14.51□□□□□ -0.09
LINC00477Q96M19 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC14.51□□□□□ -0.09
LINC00477Q96M19 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC14.5□□□□□ -0.09
LINC00477Q96M19 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC14.5□□□□□ -0.09
LINC00477Q96M19 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 ZNF815P-204ENST00000434898 1737 ntBASIC14.5□□□□□ -0.09
LINC00477Q96M19 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC14.5□□□□□ -0.09
LINC00477Q96M19 CDCA4P2-201ENST00000441182 718 ntBASIC14.5□□□□□ -0.09
LINC00477Q96M19 NME1-207ENST00000480143 964 ntTSL 2 BASIC14.5□□□□□ -0.09
LINC00477Q96M19 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC14.5□□□□□ -0.09
LINC00477Q96M19 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC14.5□□□□□ -0.09
LINC00477Q96M19 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC14.5□□□□□ -0.09
LINC00477Q96M19 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
LINC00477Q96M19 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC14.5□□□□□ -0.09
LINC00477Q96M19 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC14.5□□□□□ -0.09
LINC00477Q96M19 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC14.5□□□□□ -0.09
LINC00477Q96M19 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC14.5□□□□□ -0.09
LINC00477Q96M19 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC14.5□□□□□ -0.09
LINC00477Q96M19 AC141586.3-201ENST00000562166 1838 ntBASIC14.5□□□□□ -0.09
LINC00477Q96M19 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC14.5□□□□□ -0.09
LINC00477Q96M19 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC00477Q96M19 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
LINC00477Q96M19 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC14.49□□□□□ -0.09
LINC00477Q96M19 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
LINC00477Q96M19 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
LINC00477Q96M19 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00477Q96M19 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
LINC00477Q96M19 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00477Q96M19 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00477Q96M19 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
LINC00477Q96M19 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
LINC00477Q96M19 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
LINC00477Q96M19 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LINC00477Q96M19 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms