Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ECHDC3Q96DC8 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.43■□□□□ 0.7
ECHDC3Q96DC8 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
ECHDC3Q96DC8 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 AC008040.2-201ENST00000461049 708 ntBASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 DGCR10-201ENST00000609839 495 ntBASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
ECHDC3Q96DC8 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 AC004951.3-201ENST00000418645 1148 ntBASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ECHDC3Q96DC8 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 AL158211.5-201ENST00000623583 2518 ntBASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 AC091390.4-202ENST00000476426 537 ntBASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 BX088651.1-201ENST00000540551 451 ntBASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 AC011298.2-201ENST00000617989 482 ntBASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 AC079598.2-202ENST00000546624 1451 ntBASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ECHDC3Q96DC8 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.39■□□□□ 0.7
ECHDC3Q96DC8 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.39■□□□□ 0.7
ECHDC3Q96DC8 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
ECHDC3Q96DC8 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
ECHDC3Q96DC8 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
ECHDC3Q96DC8 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
ECHDC3Q96DC8 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
ECHDC3Q96DC8 UNC93B2-201ENST00000285383 730 ntBASIC19.39■□□□□ 0.69
ECHDC3Q96DC8 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.39■□□□□ 0.69
ECHDC3Q96DC8 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
ECHDC3Q96DC8 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.39■□□□□ 0.69
ECHDC3Q96DC8 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ECHDC3Q96DC8 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
ECHDC3Q96DC8 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.39■□□□□ 0.69
ECHDC3Q96DC8 AP000692.2-201ENST00000608391 879 ntBASIC19.39■□□□□ 0.69
ECHDC3Q96DC8 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.39■□□□□ 0.69
ECHDC3Q96DC8 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
ECHDC3Q96DC8 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
ECHDC3Q96DC8 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.39■□□□□ 0.69
ECHDC3Q96DC8 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ECHDC3Q96DC8 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ECHDC3Q96DC8 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ECHDC3Q96DC8 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
ECHDC3Q96DC8 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
ECHDC3Q96DC8 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
ECHDC3Q96DC8 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ECHDC3Q96DC8 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ECHDC3Q96DC8 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms