Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHROOM3Q8TF72 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 BX088651.1-201ENST00000540551 451 ntBASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 TEX21P-204ENST00000641479 1693 ntBASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
SHROOM3Q8TF72 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.77■□□□□ 0.76
SHROOM3Q8TF72 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.77■□□□□ 0.76
SHROOM3Q8TF72 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SHROOM3Q8TF72 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.77■□□□□ 0.76
SHROOM3Q8TF72 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
SHROOM3Q8TF72 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
SHROOM3Q8TF72 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
SHROOM3Q8TF72 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHROOM3Q8TF72 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SHROOM3Q8TF72 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHROOM3Q8TF72 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHROOM3Q8TF72 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
SHROOM3Q8TF72 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.77■□□□□ 0.76
SHROOM3Q8TF72 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.77■□□□□ 0.76
SHROOM3Q8TF72 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHROOM3Q8TF72 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SHROOM3Q8TF72 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SHROOM3Q8TF72 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHROOM3Q8TF72 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SHROOM3Q8TF72 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SHROOM3Q8TF72 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SHROOM3Q8TF72 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.77■□□□□ 0.75
SHROOM3Q8TF72 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.77■□□□□ 0.75
SHROOM3Q8TF72 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.77■□□□□ 0.75
SHROOM3Q8TF72 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.77■□□□□ 0.75
SHROOM3Q8TF72 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.77■□□□□ 0.75
SHROOM3Q8TF72 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.77■□□□□ 0.75
SHROOM3Q8TF72 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SHROOM3Q8TF72 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.77■□□□□ 0.75
SHROOM3Q8TF72 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.75
SHROOM3Q8TF72 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SHROOM3Q8TF72 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.76■□□□□ 0.75
SHROOM3Q8TF72 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 AL353807.1-201ENST00000427475 662 ntBASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms