Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
NKX2-3Q8TAU0 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
NKX2-3Q8TAU0 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC22.99■■□□□ 1.27
NKX2-3Q8TAU0 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
NKX2-3Q8TAU0 FAM197Y1-201ENST00000421178 764 ntBASIC22.99■■□□□ 1.27
NKX2-3Q8TAU0 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC22.99■■□□□ 1.27
NKX2-3Q8TAU0 DUX4L26-201ENST00000489078 1255 ntBASIC22.99■■□□□ 1.27
NKX2-3Q8TAU0 AC073195.1-201ENST00000607241 877 ntBASIC22.99■■□□□ 1.27
NKX2-3Q8TAU0 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC22.99■■□□□ 1.27
NKX2-3Q8TAU0 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
NKX2-3Q8TAU0 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC22.99■■□□□ 1.27
NKX2-3Q8TAU0 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
NKX2-3Q8TAU0 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
NKX2-3Q8TAU0 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
NKX2-3Q8TAU0 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
NKX2-3Q8TAU0 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 DUT-205ENST00000558813 769 ntTSL 2 BASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 NAPSB-206ENST00000562112 1266 ntBASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 KRT8P8-201ENST00000434750 1448 ntBASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
NKX2-3Q8TAU0 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 AC004264.1-201ENST00000608354 794 ntBASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 AC073508.3-201ENST00000619697 1419 ntBASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
NKX2-3Q8TAU0 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 TP73-202ENST00000354437 2140 ntTSL 5 BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 KRT8P9-201ENST00000558927 1449 ntBASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 ADM-207ENST00000530439 1839 ntTSL 2 BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
NKX2-3Q8TAU0 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC22.95■■□□□ 1.27
NKX2-3Q8TAU0 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
NKX2-3Q8TAU0 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
NKX2-3Q8TAU0 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC22.95■■□□□ 1.26
NKX2-3Q8TAU0 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC22.95■■□□□ 1.26
NKX2-3Q8TAU0 MESTP1-201ENST00000404287 994 ntBASIC22.95■■□□□ 1.26
NKX2-3Q8TAU0 NIFKP9-201ENST00000419265 221 ntBASIC22.95■■□□□ 1.26
NKX2-3Q8TAU0 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
NKX2-3Q8TAU0 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC22.95■■□□□ 1.26
NKX2-3Q8TAU0 NUDT16P1-203ENST00000513809 620 ntBASIC22.95■■□□□ 1.26
NKX2-3Q8TAU0 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
NKX2-3Q8TAU0 AC079598.2-202ENST00000546624 1451 ntBASIC22.95■■□□□ 1.26
NKX2-3Q8TAU0 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
NKX2-3Q8TAU0 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC22.95■■□□□ 1.26
NKX2-3Q8TAU0 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC22.95■■□□□ 1.26
NKX2-3Q8TAU0 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
NKX2-3Q8TAU0 AC007952.6-201ENST00000573168 2673 ntBASIC22.95■■□□□ 1.26
NKX2-3Q8TAU0 AC003957.1-201ENST00000625108 2673 ntBASIC22.95■■□□□ 1.26
NKX2-3Q8TAU0 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
NKX2-3Q8TAU0 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC22.94■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms