Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC25.59■■□□□ 1.69
USHBP1Q8N6Y0 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
USHBP1Q8N6Y0 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
USHBP1Q8N6Y0 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
USHBP1Q8N6Y0 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC25.59■■□□□ 1.69
USHBP1Q8N6Y0 CD320-202ENST00000537716 1119 ntTSL 2 BASIC25.59■■□□□ 1.69
USHBP1Q8N6Y0 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
USHBP1Q8N6Y0 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
USHBP1Q8N6Y0 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 COPS8-203ENST00000409334 794 ntTSL 5 BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 FAM86EP-206ENST00000510506 987 ntBASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 ETFA-216ENST00000560726 942 ntTSL 3 BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC25.58■■□□□ 1.69
USHBP1Q8N6Y0 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
USHBP1Q8N6Y0 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
USHBP1Q8N6Y0 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
USHBP1Q8N6Y0 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC25.57■■□□□ 1.68
USHBP1Q8N6Y0 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC25.57■■□□□ 1.68
USHBP1Q8N6Y0 AC009237.14-201ENST00000609975 1594 ntBASIC25.57■■□□□ 1.68
USHBP1Q8N6Y0 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
USHBP1Q8N6Y0 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
USHBP1Q8N6Y0 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
USHBP1Q8N6Y0 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC25.57■■□□□ 1.68
USHBP1Q8N6Y0 CA15P1-201ENST00000481698 905 ntBASIC25.57■■□□□ 1.68
USHBP1Q8N6Y0 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC25.57■■□□□ 1.68
USHBP1Q8N6Y0 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC25.57■■□□□ 1.68
USHBP1Q8N6Y0 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC25.57■■□□□ 1.68
USHBP1Q8N6Y0 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
USHBP1Q8N6Y0 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
USHBP1Q8N6Y0 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
USHBP1Q8N6Y0 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
USHBP1Q8N6Y0 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
USHBP1Q8N6Y0 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
USHBP1Q8N6Y0 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 Telomerase-vert.1-201ENST00000363312 438 ntBASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
USHBP1Q8N6Y0 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
USHBP1Q8N6Y0 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
USHBP1Q8N6Y0 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
USHBP1Q8N6Y0 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
USHBP1Q8N6Y0 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
USHBP1Q8N6Y0 PCED1CP-201ENST00000419887 785 ntBASIC25.55■■□□□ 1.68
USHBP1Q8N6Y0 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
USHBP1Q8N6Y0 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
USHBP1Q8N6Y0 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC25.55■■□□□ 1.68
USHBP1Q8N6Y0 AP000550.4-202ENST00000639755 178 ntBASIC25.55■■□□□ 1.68
USHBP1Q8N6Y0 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
USHBP1Q8N6Y0 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC25.55■■□□□ 1.68
USHBP1Q8N6Y0 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
USHBP1Q8N6Y0 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC25.55■■□□□ 1.68
USHBP1Q8N6Y0 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC25.55■■□□□ 1.68
USHBP1Q8N6Y0 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
USHBP1Q8N6Y0 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
USHBP1Q8N6Y0 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC25.54■■□□□ 1.68
USHBP1Q8N6Y0 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC25.54■■□□□ 1.68
USHBP1Q8N6Y0 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
USHBP1Q8N6Y0 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
USHBP1Q8N6Y0 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
USHBP1Q8N6Y0 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
USHBP1Q8N6Y0 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
USHBP1Q8N6Y0 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC25.54■■□□□ 1.68
USHBP1Q8N6Y0 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC25.54■■□□□ 1.68
USHBP1Q8N6Y0 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC25.54■■□□□ 1.68
USHBP1Q8N6Y0 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC25.54■■□□□ 1.68
USHBP1Q8N6Y0 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC25.54■■□□□ 1.68
USHBP1Q8N6Y0 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC25.54■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms