Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PKNOX1P55347 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.99■□□□□ 0.63
PKNOX1P55347 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.99■□□□□ 0.63
PKNOX1P55347 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
PKNOX1P55347 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.99■□□□□ 0.63
PKNOX1P55347 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.99■□□□□ 0.63
PKNOX1P55347 RAP2CP1-201ENST00000605103 478 ntBASIC18.99■□□□□ 0.63
PKNOX1P55347 AL137784.2-201ENST00000607332 1000 ntBASIC18.99■□□□□ 0.63
PKNOX1P55347 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
PKNOX1P55347 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
PKNOX1P55347 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.99■□□□□ 0.63
PKNOX1P55347 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
PKNOX1P55347 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PKNOX1P55347 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.99■□□□□ 0.63
PKNOX1P55347 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PKNOX1P55347 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PKNOX1P55347 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PKNOX1P55347 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.99■□□□□ 0.63
PKNOX1P55347 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PKNOX1P55347 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PKNOX1P55347 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.98■□□□□ 0.63
PKNOX1P55347 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
PKNOX1P55347 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.98■□□□□ 0.63
PKNOX1P55347 LINC01465-201ENST00000408887 1940 ntBASIC18.98■□□□□ 0.63
PKNOX1P55347 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
PKNOX1P55347 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PKNOX1P55347 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
PKNOX1P55347 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
PKNOX1P55347 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PKNOX1P55347 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
PKNOX1P55347 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.98■□□□□ 0.63
PKNOX1P55347 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.98■□□□□ 0.63
PKNOX1P55347 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.98■□□□□ 0.63
PKNOX1P55347 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PKNOX1P55347 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
PKNOX1P55347 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.98■□□□□ 0.63
PKNOX1P55347 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.98■□□□□ 0.63
PKNOX1P55347 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.98■□□□□ 0.63
PKNOX1P55347 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.98■□□□□ 0.63
PKNOX1P55347 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
PKNOX1P55347 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
PKNOX1P55347 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PKNOX1P55347 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PKNOX1P55347 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.98■□□□□ 0.63
PKNOX1P55347 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PKNOX1P55347 AC005082.1-201ENST00000413042 2259 ntBASIC18.98■□□□□ 0.63
PKNOX1P55347 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
PKNOX1P55347 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PKNOX1P55347 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PKNOX1P55347 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.97■□□□□ 0.63
PKNOX1P55347 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PKNOX1P55347 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
PKNOX1P55347 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PKNOX1P55347 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
PKNOX1P55347 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
PKNOX1P55347 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
PKNOX1P55347 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.97■□□□□ 0.63
PKNOX1P55347 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.97■□□□□ 0.63
PKNOX1P55347 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PKNOX1P55347 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PKNOX1P55347 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
PKNOX1P55347 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.97■□□□□ 0.63
PKNOX1P55347 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.97■□□□□ 0.63
PKNOX1P55347 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.97■□□□□ 0.63
PKNOX1P55347 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.97■□□□□ 0.63
PKNOX1P55347 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.97■□□□□ 0.63
PKNOX1P55347 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.97■□□□□ 0.63
PKNOX1P55347 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.97■□□□□ 0.63
PKNOX1P55347 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PKNOX1P55347 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PKNOX1P55347 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.97■□□□□ 0.63
PKNOX1P55347 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
PKNOX1P55347 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PKNOX1P55347 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
PKNOX1P55347 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PKNOX1P55347 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.97■□□□□ 0.63
PKNOX1P55347 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.97■□□□□ 0.63
PKNOX1P55347 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.97■□□□□ 0.63
PKNOX1P55347 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.97■□□□□ 0.63
PKNOX1P55347 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PKNOX1P55347 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
PKNOX1P55347 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
PKNOX1P55347 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
PKNOX1P55347 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
PKNOX1P55347 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PKNOX1P55347 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PKNOX1P55347 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PKNOX1P55347 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PKNOX1P55347 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PKNOX1P55347 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PKNOX1P55347 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PKNOX1P55347 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
PKNOX1P55347 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PKNOX1P55347 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
PKNOX1P55347 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.96■□□□□ 0.63
PKNOX1P55347 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PKNOX1P55347 MIPEPP3-201ENST00000412105 444 ntBASIC18.96■□□□□ 0.63
PKNOX1P55347 CROCCP5-201ENST00000436658 830 ntBASIC18.96■□□□□ 0.63
PKNOX1P55347 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
PKNOX1P55347 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms