Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.4■□□□□ 0.54
LIM2P55344 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
LIM2P55344 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LIM2P55344 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIM2P55344 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIM2P55344 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
LIM2P55344 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIM2P55344 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIM2P55344 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
LIM2P55344 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIM2P55344 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIM2P55344 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.4■□□□□ 0.54
LIM2P55344 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.4■□□□□ 0.54
LIM2P55344 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIM2P55344 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIM2P55344 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.4■□□□□ 0.54
LIM2P55344 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.4■□□□□ 0.54
LIM2P55344 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.4■□□□□ 0.54
LIM2P55344 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.4■□□□□ 0.54
LIM2P55344 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.4■□□□□ 0.54
LIM2P55344 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.4■□□□□ 0.54
LIM2P55344 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
LIM2P55344 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.4■□□□□ 0.54
LIM2P55344 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIM2P55344 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIM2P55344 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LIM2P55344 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
LIM2P55344 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.4■□□□□ 0.54
LIM2P55344 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.4■□□□□ 0.54
LIM2P55344 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.4■□□□□ 0.54
LIM2P55344 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LIM2P55344 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
LIM2P55344 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
LIM2P55344 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.39■□□□□ 0.54
LIM2P55344 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.39■□□□□ 0.53
LIM2P55344 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
LIM2P55344 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.39■□□□□ 0.53
LIM2P55344 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.53
LIM2P55344 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
LIM2P55344 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIM2P55344 UBE2SP1-201ENST00000450587 669 ntBASIC18.39■□□□□ 0.53
LIM2P55344 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.39■□□□□ 0.53
LIM2P55344 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.39■□□□□ 0.53
LIM2P55344 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.39■□□□□ 0.53
LIM2P55344 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.39■□□□□ 0.53
LIM2P55344 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIM2P55344 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.39■□□□□ 0.53
LIM2P55344 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIM2P55344 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.39■□□□□ 0.53
LIM2P55344 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIM2P55344 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.39■□□□□ 0.53
LIM2P55344 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
LIM2P55344 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIM2P55344 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIM2P55344 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIM2P55344 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
LIM2P55344 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
LIM2P55344 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIM2P55344 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIM2P55344 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.38■□□□□ 0.53
LIM2P55344 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIM2P55344 AP000974.1-201ENST00000623909 2387 ntBASIC18.38■□□□□ 0.53
LIM2P55344 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.38■□□□□ 0.53
LIM2P55344 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIM2P55344 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIM2P55344 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
LIM2P55344 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIM2P55344 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
LIM2P55344 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
LIM2P55344 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIM2P55344 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.38■□□□□ 0.53
LIM2P55344 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIM2P55344 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.38■□□□□ 0.53
LIM2P55344 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIM2P55344 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
LIM2P55344 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
LIM2P55344 HTR7P1-201ENST00000538670 1336 ntBASIC18.38■□□□□ 0.53
LIM2P55344 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIM2P55344 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIM2P55344 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIM2P55344 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.38■□□□□ 0.53
LIM2P55344 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIM2P55344 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
LIM2P55344 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
LIM2P55344 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
LIM2P55344 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.37■□□□□ 0.53
LIM2P55344 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIM2P55344 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIM2P55344 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LIM2P55344 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIM2P55344 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIM2P55344 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIM2P55344 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIM2P55344 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIM2P55344 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIM2P55344 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.37■□□□□ 0.53
LIM2P55344 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIM2P55344 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.37■□□□□ 0.53
LIM2P55344 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.37■□□□□ 0.53
LIM2P55344 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms