Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDH4P55283 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CDH4P55283 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.85■□□□□ 0.77
CDH4P55283 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.85■□□□□ 0.77
CDH4P55283 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.85■□□□□ 0.77
CDH4P55283 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDH4P55283 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
CDH4P55283 MESTP1-201ENST00000404287 994 ntBASIC19.85■□□□□ 0.77
CDH4P55283 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.85■□□□□ 0.77
CDH4P55283 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.85■□□□□ 0.77
CDH4P55283 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CDH4P55283 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.85■□□□□ 0.77
CDH4P55283 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.85■□□□□ 0.77
CDH4P55283 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.85■□□□□ 0.77
CDH4P55283 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.85■□□□□ 0.77
CDH4P55283 RCC2P6-201ENST00000526625 1557 ntBASIC19.85■□□□□ 0.77
CDH4P55283 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDH4P55283 AC104417.2-201ENST00000562989 1793 ntBASIC19.85■□□□□ 0.77
CDH4P55283 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDH4P55283 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDH4P55283 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
CDH4P55283 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDH4P55283 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CDH4P55283 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CDH4P55283 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.84■□□□□ 0.77
CDH4P55283 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.84■□□□□ 0.77
CDH4P55283 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CDH4P55283 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.84■□□□□ 0.77
CDH4P55283 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
CDH4P55283 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CDH4P55283 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CDH4P55283 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDH4P55283 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CDH4P55283 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.84■□□□□ 0.77
CDH4P55283 AC011506.1-201ENST00000474329 610 ntBASIC19.84■□□□□ 0.77
CDH4P55283 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.84■□□□□ 0.77
CDH4P55283 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.84■□□□□ 0.77
CDH4P55283 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.84■□□□□ 0.77
CDH4P55283 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDH4P55283 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CDH4P55283 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDH4P55283 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDH4P55283 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CDH4P55283 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDH4P55283 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDH4P55283 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDH4P55283 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.77
CDH4P55283 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CDH4P55283 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDH4P55283 UNC93B2-201ENST00000285383 730 ntBASIC19.83■□□□□ 0.77
CDH4P55283 AC004951.3-201ENST00000418645 1148 ntBASIC19.83■□□□□ 0.77
CDH4P55283 RBM17P1-201ENST00000453646 1190 ntBASIC19.83■□□□□ 0.77
CDH4P55283 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CDH4P55283 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.83■□□□□ 0.77
CDH4P55283 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.83■□□□□ 0.77
CDH4P55283 AC130371.2-201ENST00000619443 611 ntBASIC19.83■□□□□ 0.77
CDH4P55283 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDH4P55283 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDH4P55283 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDH4P55283 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDH4P55283 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.83■□□□□ 0.76
CDH4P55283 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.76
CDH4P55283 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDH4P55283 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDH4P55283 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDH4P55283 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDH4P55283 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDH4P55283 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDH4P55283 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDH4P55283 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDH4P55283 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
CDH4P55283 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDH4P55283 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.82■□□□□ 0.76
CDH4P55283 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CDH4P55283 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDH4P55283 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CDH4P55283 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.82■□□□□ 0.76
CDH4P55283 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CDH4P55283 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CDH4P55283 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.82■□□□□ 0.76
CDH4P55283 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDH4P55283 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.82■□□□□ 0.76
CDH4P55283 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.82■□□□□ 0.76
CDH4P55283 TSPY15P-201ENST00000457163 923 ntBASIC19.82■□□□□ 0.76
CDH4P55283 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.82■□□□□ 0.76
CDH4P55283 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.82■□□□□ 0.76
CDH4P55283 AC011298.2-201ENST00000617989 482 ntBASIC19.82■□□□□ 0.76
CDH4P55283 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.82■□□□□ 0.76
CDH4P55283 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
CDH4P55283 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDH4P55283 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CDH4P55283 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.82■□□□□ 0.76
CDH4P55283 AFG3L1P-217ENST00000557444 2447 ntBASIC19.82■□□□□ 0.76
CDH4P55283 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CDH4P55283 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDH4P55283 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.82■□□□□ 0.76
CDH4P55283 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.82■□□□□ 0.76
CDH4P55283 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH4P55283 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.81■□□□□ 0.76
CDH4P55283 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms