Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
COL18A1P39060 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
COL18A1P39060 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC25.69■■□□□ 1.7
COL18A1P39060 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC25.69■■□□□ 1.7
COL18A1P39060 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
COL18A1P39060 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
COL18A1P39060 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC25.69■■□□□ 1.7
COL18A1P39060 AC246785.2-201ENST00000432512 513 ntBASIC25.69■■□□□ 1.7
COL18A1P39060 AC140113.3-201ENST00000605663 199 ntBASIC25.69■■□□□ 1.7
COL18A1P39060 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC25.69■■□□□ 1.7
COL18A1P39060 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC25.69■■□□□ 1.7
COL18A1P39060 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
COL18A1P39060 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC25.69■■□□□ 1.7
COL18A1P39060 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC25.69■■□□□ 1.7
COL18A1P39060 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
COL18A1P39060 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
COL18A1P39060 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
COL18A1P39060 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
COL18A1P39060 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC25.69■■□□□ 1.7
COL18A1P39060 MIR3180-1-201ENST00000580374 94 ntBASIC25.69■■□□□ 1.7
COL18A1P39060 MIR3180-3-201ENST00000584616 94 ntBASIC25.69■■□□□ 1.7
COL18A1P39060 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
COL18A1P39060 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC25.68■■□□□ 1.7
COL18A1P39060 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC25.68■■□□□ 1.7
COL18A1P39060 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
COL18A1P39060 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
COL18A1P39060 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC25.68■■□□□ 1.7
COL18A1P39060 BCL10-202ENST00000620248 774 ntTSL 5 BASIC25.68■■□□□ 1.7
COL18A1P39060 WDR6-223ENST00000627177 207 ntTSL 2 BASIC25.68■■□□□ 1.7
COL18A1P39060 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC25.68■■□□□ 1.7
COL18A1P39060 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
COL18A1P39060 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
COL18A1P39060 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC25.68■■□□□ 1.7
COL18A1P39060 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
COL18A1P39060 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC25.67■■□□□ 1.7
COL18A1P39060 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
COL18A1P39060 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC25.67■■□□□ 1.7
COL18A1P39060 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
COL18A1P39060 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL18A1P39060 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC25.67■■□□□ 1.7
COL18A1P39060 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC25.67■■□□□ 1.7
COL18A1P39060 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC25.67■■□□□ 1.7
COL18A1P39060 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC25.67■■□□□ 1.7
COL18A1P39060 IRF5-214ENST00000613821 595 ntTSL 5 BASIC25.67■■□□□ 1.7
COL18A1P39060 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL18A1P39060 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL18A1P39060 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL18A1P39060 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL18A1P39060 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL18A1P39060 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC25.67■■□□□ 1.7
COL18A1P39060 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
COL18A1P39060 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC25.67■■□□□ 1.7
COL18A1P39060 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC25.67■■□□□ 1.7
COL18A1P39060 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL18A1P39060 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC25.66■■□□□ 1.7
COL18A1P39060 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL18A1P39060 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL18A1P39060 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL18A1P39060 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
COL18A1P39060 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
COL18A1P39060 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL18A1P39060 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC25.66■■□□□ 1.7
COL18A1P39060 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
COL18A1P39060 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC25.66■■□□□ 1.7
COL18A1P39060 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
COL18A1P39060 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC25.66■■□□□ 1.7
COL18A1P39060 AL691432.2-201ENST00000607222 2038 ntBASIC25.66■■□□□ 1.7
COL18A1P39060 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
COL18A1P39060 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC25.65■■□□□ 1.7
COL18A1P39060 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC25.65■■□□□ 1.7
COL18A1P39060 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL18A1P39060 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC25.65■■□□□ 1.7
COL18A1P39060 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC25.65■■□□□ 1.7
COL18A1P39060 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
COL18A1P39060 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL18A1P39060 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
COL18A1P39060 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC25.65■■□□□ 1.7
COL18A1P39060 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL18A1P39060 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL18A1P39060 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL18A1P39060 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
COL18A1P39060 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
COL18A1P39060 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
COL18A1P39060 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
COL18A1P39060 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
COL18A1P39060 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
COL18A1P39060 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC25.64■■□□□ 1.7
COL18A1P39060 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
COL18A1P39060 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC25.64■■□□□ 1.7
COL18A1P39060 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.7
COL18A1P39060 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC25.64■■□□□ 1.7
COL18A1P39060 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
COL18A1P39060 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC25.64■■□□□ 1.69
COL18A1P39060 GOLGA2P11-201ENST00000562660 1621 ntBASIC25.64■■□□□ 1.69
COL18A1P39060 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
COL18A1P39060 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC25.64■■□□□ 1.69
COL18A1P39060 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
COL18A1P39060 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC25.64■■□□□ 1.69
COL18A1P39060 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC25.63■■□□□ 1.69
COL18A1P39060 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms