Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
MSH3P20585 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH3P20585 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.29■□□□□ 0.68
MSH3P20585 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.29■□□□□ 0.68
MSH3P20585 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.29■□□□□ 0.68
MSH3P20585 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.29■□□□□ 0.68
MSH3P20585 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.29■□□□□ 0.68
MSH3P20585 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH3P20585 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.29■□□□□ 0.68
MSH3P20585 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH3P20585 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH3P20585 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.29■□□□□ 0.68
MSH3P20585 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSH3P20585 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSH3P20585 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH3P20585 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH3P20585 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH3P20585 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.29■□□□□ 0.68
MSH3P20585 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
MSH3P20585 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
MSH3P20585 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSH3P20585 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
MSH3P20585 HTR7P1-201ENST00000538670 1336 ntBASIC19.28■□□□□ 0.68
MSH3P20585 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSH3P20585 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSH3P20585 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.28■□□□□ 0.68
MSH3P20585 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MSH3P20585 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSH3P20585 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.28■□□□□ 0.68
MSH3P20585 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.28■□□□□ 0.68
MSH3P20585 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MSH3P20585 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.28■□□□□ 0.68
MSH3P20585 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSH3P20585 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.28■□□□□ 0.68
MSH3P20585 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSH3P20585 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSH3P20585 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
MSH3P20585 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MSH3P20585 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
MSH3P20585 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.28■□□□□ 0.68
MSH3P20585 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.28■□□□□ 0.68
MSH3P20585 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MSH3P20585 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.27■□□□□ 0.68
MSH3P20585 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MSH3P20585 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MSH3P20585 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.27■□□□□ 0.68
MSH3P20585 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MSH3P20585 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MSH3P20585 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.27■□□□□ 0.68
MSH3P20585 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.27■□□□□ 0.68
MSH3P20585 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.27■□□□□ 0.68
MSH3P20585 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MSH3P20585 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.27■□□□□ 0.68
MSH3P20585 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.27■□□□□ 0.68
MSH3P20585 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MSH3P20585 C1QL1P1-201ENST00000568105 661 ntBASIC19.27■□□□□ 0.68
MSH3P20585 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.27■□□□□ 0.68
MSH3P20585 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MSH3P20585 AP006294.2-201ENST00000641667 209 ntBASIC19.27■□□□□ 0.68
MSH3P20585 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.27■□□□□ 0.68
MSH3P20585 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
MSH3P20585 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.27■□□□□ 0.68
MSH3P20585 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.27■□□□□ 0.67
MSH3P20585 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
MSH3P20585 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.27■□□□□ 0.67
MSH3P20585 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
MSH3P20585 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSH3P20585 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.26■□□□□ 0.67
MSH3P20585 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSH3P20585 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSH3P20585 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
MSH3P20585 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
MSH3P20585 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.26■□□□□ 0.67
MSH3P20585 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
MSH3P20585 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.26■□□□□ 0.67
MSH3P20585 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
MSH3P20585 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.26■□□□□ 0.67
MSH3P20585 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSH3P20585 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSH3P20585 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
MSH3P20585 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSH3P20585 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
MSH3P20585 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
MSH3P20585 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.26■□□□□ 0.67
MSH3P20585 AL353807.1-201ENST00000427475 662 ntBASIC19.26■□□□□ 0.67
MSH3P20585 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSH3P20585 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSH3P20585 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MSH3P20585 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
MSH3P20585 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.26■□□□□ 0.67
MSH3P20585 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.26■□□□□ 0.67
MSH3P20585 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
MSH3P20585 RARRES2P10-201ENST00000564312 460 ntBASIC19.26■□□□□ 0.67
MSH3P20585 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.26■□□□□ 0.67
MSH3P20585 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.26■□□□□ 0.67
MSH3P20585 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.26■□□□□ 0.67
MSH3P20585 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
MSH3P20585 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
MSH3P20585 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.26■□□□□ 0.67
MSH3P20585 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms